Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00289
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 126 2e-29
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 124 7e-29
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 123 1e-28
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.5
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 29 2.6
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.4
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.0
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.0
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 28 6.0
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 27 7.9
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 27 7.9
At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family... 27 7.9
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 7.9
At1g64690.1 68414.m07333 expressed protein 27 7.9
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 126 bits (303), Expect = 2e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKRE 257
+R R EA+RKGRH G+GKR+
Sbjct: 61 SRARALNEAKRKGRHSGYGKRK 82
Score = 103 bits (246), Expect = 1e-22
Identities = 52/95 (54%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GT AR+P K LW +KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 434 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 532
IH+ KAEKAR K L+DQ EA+R NK R AR
Sbjct: 142 IHKMKAEKAREKTLADQFEAKRIKNKASRERKFAR 176
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 124 bits (298), Expect = 7e-29
Identities = 55/82 (67%), Positives = 68/82 (82%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKRE 257
+R RK A+ KGRH G+GKR+
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRK 82
Score = 102 bits (244), Expect = 2e-22
Identities = 51/95 (53%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GT AR+P K LW KKID+H+YH +YM+ KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMES 141
Query: 434 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 532
IH+ KAEKAR K LSDQ EA+R NK R AR
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNKASRERKHAR 176
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 123 bits (296), Expect = 1e-28
Identities = 53/82 (64%), Positives = 70/82 (85%)
Frame = +3
Query: 12 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 191
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 192 ARVRKNTEARRKGRHCGFGKRE 257
+R R+ A+RKGRH G+GKR+
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRK 82
Score = 104 bits (250), Expect = 4e-23
Identities = 53/95 (55%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +2
Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
+GT AR+P K LW KKIDRH+YH +YMK KGNVFKNKRVLME
Sbjct: 82 KGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMES 141
Query: 434 IHRKKAEKARTKMLSDQAEARR--NKVRRHASAAR 532
IH+ KAEKAR K LSDQ EA+R NK R AR
Sbjct: 142 IHKSKAEKAREKTLSDQFEAKRAKNKASRERKHAR 176
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +2
Query: 347 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 457
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 371 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVR---RHASAARN 535
H + G V + + +++ + AEK ++ +++ ++RR++ R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 536 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 619
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 371 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVR---RHASAARN 535
H + G V + + +++ + AEK ++ +++ ++RR++ R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 536 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 619
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -3
Query: 535 VPRGACVP---PHF---IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 386
VP+G P PH IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 957 VPQGCPEPRRRPHSAQKIALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 483 WSLSIFVLAFSAFFLWMYSMSTRL 412
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 172 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 77
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 88 GSNHTFFLPHRITEAASLFCSLRELI 11
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 1324
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = -1
Query: 363 CLSIFLAVLYFRSNFLKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVLLCFCGHERGS 184
C S V+ S F S G+R+ A L Y DD F+ L F E +
Sbjct: 1222 CNSANAPVINLESKFAAHAQATEKESHEGVRSNAGALEYNDDDDDAFFATLDFDAMEAQA 1281
Query: 183 VLL 175
LL
Sbjct: 1282 TLL 1284
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 392 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRR 556
KG+ + ++ E + +KK EKAR + ++ AE R + A+A R+R
Sbjct: 562 KGDPERLRKEREELVLQKKKEKARLQAEAEAAEDARRQAEAEAAAEAAAEAKRKR 616
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 434 IHRKKAEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 604
+H +K EK + +A++ K + H S PP++RN C S + K L +
Sbjct: 603 VHNRKNEKRGIHLPQKRAKSPITKGKSHESP-----PPKKRNTCSVSSQTRKVSLKI 654
>At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 600
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 449 AEKARTKMLSDQAEARRNKVRRHASAARNVLPPRRR-NCCRPSLEKTK 589
A KA +D A++R+ K ++ A A+N PP R +L+K +
Sbjct: 456 ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKR 503
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 344 AKKIDRHLYHSLYMKAKGNVFKNKRVL 424
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At1g64690.1 68414.m07333 expressed protein
Length = 273
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 350 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSD---QAEARRNKVRRHA 520
++ R L M V + +RV M+ + + + + L + Q E RN++ +
Sbjct: 142 RMKRDLEEERQMHRLAEVLREERVQMKLMDARLFLEEKLSELEEANRQGERERNRMMKPK 201
Query: 521 SAARNVLPPRRRNCCRPSLEK 583
R P RR C P +++
Sbjct: 202 ILERACSSPARRRCENPQIKR 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,573
Number of Sequences: 28952
Number of extensions: 278201
Number of successful extensions: 813
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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