Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00288
(664 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 151 1e-35
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 151 1e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 137 2e-31
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 137 3e-31
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 6e-28
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 120 3e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 114 2e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 114 2e-24
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 113 5e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 108 1e-22
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 101 1e-20
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 80 5e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 71 3e-11
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 70 4e-11
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 64 3e-09
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 60 6e-08
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 58 2e-07
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 57 3e-07
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 57 4e-07
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 54 3e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 3e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 51 3e-05
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 50 7e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 50 7e-05
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 48 2e-04
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 48 2e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 47 4e-04
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 47 4e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 47 5e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 45 0.002
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 40 0.040
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 38 0.16
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 0.66
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 36 0.87
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.5
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_A5FU38 Cluster: Lytic transglycosylase, catalytic precu... 33 6.1
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 8.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 151 bits (366), Expect = 1e-35
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K
Sbjct: 75 KVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
VP+LVTHDGRTIRYPDPLI NDS+
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIHANDSV 160
Score = 142 bits (343), Expect = 9e-33
Identities = 66/75 (88%), Positives = 69/75 (92%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 211 VLKIVKQRLIKVDGK 255
V KIV QRL+KVDGK
Sbjct: 61 VTKIVMQRLVKVDGK 75
Score = 65.7 bits (153), Expect = 9e-10
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
P P + Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGT 194
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
LG G +V+RERHPGSFDIVHIKD
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKD 212
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 151 bits (366), Expect = 1e-35
Identities = 66/86 (76%), Positives = 76/86 (88%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K
Sbjct: 75 KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+P+LVTHD RTIRYPDPLIKVND+I
Sbjct: 135 GIPHLVTHDARTIRYPDPLIKVNDTI 160
Score = 139 bits (336), Expect = 6e-32
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 211 VLKIVKQRLIKVDGK 255
V KI QR IK+DGK
Sbjct: 61 VKKICMQRFIKIDGK 75
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P + Q+D+ T KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIG 193
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
LG G I +RERHPGSFD+VH+KD
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKD 212
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 137 bits (332), Expect = 2e-31
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PYL T+DGRTIRYPDPLIK ND+I
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTI 160
Score = 126 bits (304), Expect = 5e-28
Identities = 57/75 (76%), Positives = 65/75 (86%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V+ I+ QR I+VDGK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P + +LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 137 bits (331), Expect = 3e-31
Identities = 62/74 (83%), Positives = 67/74 (90%)
Frame = +1
Query: 34 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 213
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 214 LKIVKQRLIKVDGK 255
KI QR IK+DGK
Sbjct: 62 KKICMQRFIKIDGK 75
Score = 82.6 bits (195), Expect(2) = 2e-30
Identities = 37/46 (80%), Positives = 41/46 (89%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 389
+VRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 75 KVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 72.9 bits (171), Expect(2) = 2e-30
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +3
Query: 387 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSI 509
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTV 192
Score = 53.6 bits (123), Expect = 4e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P + ++D+ T KI DFIKF++ N+CM+TGG NLGR+G
Sbjct: 182 PDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIG 225
Score = 43.2 bits (97), Expect = 0.006
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
LG G I +RERHPGSFD+VH+KD
Sbjct: 221 LGRIGVITNRERHPGSFDVVHVKD 244
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect = 6e-28
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 211 VLKIVKQRLIKVDGK 255
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 97.5 bits (232), Expect = 3e-19
Identities = 41/57 (71%), Positives = 49/57 (85%)
Frame = +3
Query: 339 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSI 509
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+I
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTI 132
Score = 57.6 bits (133), Expect = 2e-07
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P + Q+D+ T KI DF KF++GNLCM+TGG NLGR+G
Sbjct: 122 PDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIG 165
Score = 41.1 bits (92), Expect = 0.023
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
LG G I +RE HPGSFD+VH+KD
Sbjct: 161 LGRIGVITNRENHPGSFDVVHVKD 184
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 120 bits (289), Expect = 3e-26
Identities = 52/75 (69%), Positives = 60/75 (80%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V IVK R IK+DGK
Sbjct: 61 VTMIVKNRTIKIDGK 75
Score = 110 bits (265), Expect = 3e-23
Identities = 47/86 (54%), Positives = 65/86 (75%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
++RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G
Sbjct: 75 KIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTG 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PY+VTHDGRTIRYP P ++ ND+I
Sbjct: 135 AIPYIVTHDGRTIRYPHPELQANDTI 160
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P Q+ +L++ T KI+DF+KF+ GN M+ GG +GRVG
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVG 193
Score = 39.5 bits (88), Expect = 0.071
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
+G G IV RE HPGSF+IVHIKD
Sbjct: 189 MGRVGVIVKREVHPGSFEIVHIKD 212
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 114 bits (275), Expect = 2e-24
Identities = 51/86 (59%), Positives = 67/86 (77%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K
Sbjct: 75 KVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PY+VTHDGRTIR+P+ LIK NDSI
Sbjct: 135 GIPYIVTHDGRTIRFPNLLIKSNDSI 160
Score = 101 bits (241), Expect = 2e-20
Identities = 45/75 (60%), Positives = 58/75 (77%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 211 VLKIVKQRLIKVDGK 255
L I+K+ I VDGK
Sbjct: 61 SLNILKKNEIYVDGK 75
Score = 44.0 bits (99), Expect = 0.003
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 512 LDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 162 LDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 114 bits (274), Expect = 2e-24
Identities = 49/86 (56%), Positives = 64/86 (74%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP
Sbjct: 187 KVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPN 246
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PY+VTHD RTIR+P+P IK+ D++
Sbjct: 247 QIPYIVTHDSRTIRFPNPEIKIGDTL 272
Score = 71.7 bits (168), Expect = 1e-11
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 31/105 (29%)
Frame = +1
Query: 34 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 126
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 127 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGK 255
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGK
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGK 187
Score = 39.5 bits (88), Expect = 0.071
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P + + D+ KI +F ESGN+C I G N+GRVG
Sbjct: 262 PNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVG 305
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 113 bits (271), Expect = 5e-24
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +1
Query: 22 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 201
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 202 GNEVLKIVKQRLIKVDGK 255
G+EV KI Q IKVDGK
Sbjct: 68 GDEVKKICMQWFIKVDGK 85
Score = 107 bits (256), Expect = 3e-22
Identities = 47/86 (54%), Positives = 62/86 (72%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
++RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K
Sbjct: 85 KIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAK 144
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+P+LV HD T+R+PD LIKVND+I
Sbjct: 145 GIPHLVIHDIHTVRHPDSLIKVNDTI 170
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 509 QLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
Q+D+ T KI +KF++GNLC++TGG N GR+G
Sbjct: 171 QIDLETGKITA-LKFDTGNLCLVTGGGNWGRIG 202
Score = 34.3 bits (75), Expect = 2.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 595 GACGHIVSRERHPGSFDIVHIKD 663
G G I +RERHP SFD H+KD
Sbjct: 199 GRIGVITNRERHPVSFDTFHVKD 221
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 108 bits (259), Expect = 1e-22
Identities = 45/86 (52%), Positives = 64/86 (74%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K
Sbjct: 89 KVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAK 148
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+P++VTHDGRTI Y DP ++V+D++
Sbjct: 149 GIPHVVTHDGRTISYVDPSVRVHDAL 174
Score = 107 bits (257), Expect = 2e-22
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +1
Query: 4 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 183
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 184 LKYALTGNEVLKIVKQRLIKVDGK 255
LKYALT E + IVK+RL+KVDGK
Sbjct: 66 LKYALTAKEAVAIVKRRLVKVDGK 89
Score = 36.7 bits (81), Expect = 0.50
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +2
Query: 509 QLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
+ +I T ++ IKF+ G++ M+T G N+GRVGT
Sbjct: 175 KFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGT 208
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 101 bits (243), Expect = 1e-20
Identities = 46/68 (67%), Positives = 53/68 (77%)
Frame = +1
Query: 46 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 225
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 226 KQRLIKVD 249
+Q L+ VD
Sbjct: 63 RQGLVHVD 70
Score = 97.5 bits (232), Expect = 3e-19
Identities = 46/84 (54%), Positives = 55/84 (65%)
Frame = +3
Query: 258 RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNV 437
R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T V
Sbjct: 74 RRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRV 133
Query: 438 PYLVTHDGRTIRYPDPLIKVNDSI 509
P VTHDG IRYPDP + D+I
Sbjct: 134 PVAVTHDGHRIRYPDPHTSIGDTI 157
Score = 32.7 bits (71), Expect = 8.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 595 GACGHIVSRERHPGSFDIVHIKD 663
G G IV E HPG+F+I H+KD
Sbjct: 187 GRIGEIVKVECHPGAFNIAHLKD 209
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 79.8 bits (188), Expect = 5e-14
Identities = 39/85 (45%), Positives = 57/85 (67%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 434
VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + +
Sbjct: 76 VRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QG 134
Query: 435 VPYLVTHDGRTIRYPDPLIKVNDSI 509
+PY+V+ G +IR+ DP I + +I
Sbjct: 135 IPYIVSSCGLSIRFCDPAIDLGYTI 159
Score = 77.4 bits (182), Expect = 3e-13
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 211 VLKIVKQRLIKVDGK 255
+ I+ ++ IKV+G+
Sbjct: 61 LSIILAEKNIKVNGR 75
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 70.5 bits (165), Expect = 3e-11
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +1
Query: 37 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 216
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 217 KIVKQRLIKVDG 252
KI++ I +DG
Sbjct: 64 KIIQTGKILIDG 75
Score = 44.4 bits (100), Expect = 0.002
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPK 431
R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V G
Sbjct: 78 RKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-G 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDS 506
N+ L HDGR + ++KV+D+
Sbjct: 135 NI-QLNLHDGR-----NQIVKVSDA 153
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 70.1 bits (164), Expect = 4e-11
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 216
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 217 KIVKQRLIKVDG 252
KI+ + I VDG
Sbjct: 67 KIITRGEIYVDG 78
Score = 52.4 bits (120), Expect = 9e-06
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 434
VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 80 VRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGG 139
Query: 435 VPYLVTHDGRT--IRYPDP 485
+ HDG+ + DP
Sbjct: 140 NLQITMHDGKNWLVEIEDP 158
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 64.1 bits (149), Expect = 3e-09
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 52 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 228
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 229 QRLIKVDG 252
+ +KVDG
Sbjct: 63 RGYVKVDG 70
Score = 46.4 bits (105), Expect = 6e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 434
VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 72 VRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGG 131
Query: 435 VPYLVTHDGRTI 470
L HDGR +
Sbjct: 132 RIQLHFHDGRNL 143
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +1
Query: 22 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 201
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 202 GNEVLKIVKQRLIKVDGK 255
E +I+ R+I+VDG+
Sbjct: 61 MKEARRILASRVIEVDGR 78
Score = 49.6 bits (113), Expect = 7e-05
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 434
V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 79 VVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNG 138
Query: 435 VPYLVTHDGRTI 470
HDGR +
Sbjct: 139 DLQFTLHDGRNV 150
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 58.0 bits (134), Expect = 2e-07
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 232 RLIKVDGK 255
+KVDGK
Sbjct: 63 GYVKVDGK 70
Score = 47.6 bits (108), Expect = 3e-04
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 70 KVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKA 129
Query: 432 NVPYLVTHDGRTI 470
L HDGR I
Sbjct: 130 GKIQLNLHDGRNI 142
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 57.2 bits (132), Expect = 3e-07
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 31 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 207
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 208 EVLKIVKQRLIKVDG 252
E K++ + +VDG
Sbjct: 61 EARKLISEGHFRVDG 75
Score = 52.4 bits (120), Expect = 9e-06
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T
Sbjct: 77 VRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKG 135
Query: 432 NVPYLVTHDGRTI--RYPDPLIKVND 503
L HDGR I R DP V D
Sbjct: 136 GHVQLNLHDGRNILVRVKDPRNPVED 161
Score = 34.3 bits (75), Expect = 2.7
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 461 PHHPLPRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P +P+ Y++ + + +I IKF G + +I GGRN+GRVG
Sbjct: 155 PRNPV-EDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 56.8 bits (131), Expect = 4e-07
Identities = 32/103 (31%), Positives = 48/103 (46%)
Frame = +3
Query: 264 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPY 443
D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 80 DYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQ 137
Query: 444 LVTHDGRTIRYPDPLIKVNDSIXXXXXXXXXXXXXXXXXGTCV 572
+ HDG+ + + V D I G CV
Sbjct: 138 VNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 52.8 bits (121), Expect = 7e-06
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +1
Query: 40 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 219
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 220 IVKQRLIKVDGK 255
I+ + VDG+
Sbjct: 65 IINSGNVLVDGR 76
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 54.0 bits (124), Expect = 3e-06
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 232 RLIKVDGK 255
+ VDGK
Sbjct: 65 GKVLVDGK 72
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.0 bits (124), Expect = 3e-06
Identities = 30/77 (38%), Positives = 40/77 (51%)
Frame = +3
Query: 273 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 452
+ GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P N L T
Sbjct: 78 FAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGT 135
Query: 453 HDGRTIRYPDPLIKVND 503
HDGRT D KV D
Sbjct: 136 HDGRTFITDDKSKKVGD 152
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 58 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 237
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 238 IKVDGK 255
+KVDGK
Sbjct: 66 VKVDGK 71
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 232 RLIKVDGK 255
R + VDG+
Sbjct: 65 RQVLVDGR 72
Score = 41.9 bits (94), Expect = 0.013
Identities = 25/76 (32%), Positives = 37/76 (48%)
Frame = +3
Query: 255 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 434
+ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 73 IETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDG 130
Query: 435 VPYLVTHDGRTIRYPD 482
+ HDGR I D
Sbjct: 131 KTQIHLHDGRNILVSD 146
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 49.6 bits (113), Expect = 7e-05
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +1
Query: 58 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 237
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 238 IKVDG 252
+ ++G
Sbjct: 64 VLLNG 68
Score = 32.7 bits (71), Expect = 8.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 261 TDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 422
TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 72 TDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 49.6 bits (113), Expect = 7e-05
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +3
Query: 273 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 452
+P MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T
Sbjct: 82 FPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIIT 141
Query: 453 HDGRTIRYPDPLIKVNDSI 509
D R ++ IKV DS+
Sbjct: 142 DDLRELKINYAKIKVEDSL 160
Score = 42.7 bits (96), Expect = 0.008
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 211 VLKIVKQRLIKVDGK 255
K+VK + V+GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 264 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVP 440
D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+ G +
Sbjct: 76 DRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI- 134
Query: 441 YLVTHDGRTI 470
L HDG+TI
Sbjct: 135 QLGFHDGKTI 144
Score = 35.9 bits (79), Expect = 0.87
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +1
Query: 58 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 237
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 238 IKVDGK 255
+KVDG+
Sbjct: 67 VKVDGR 72
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 264 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVP 440
D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ +
Sbjct: 80 DYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQ 139
Query: 441 YLVTHDGRT 467
Y +T DGRT
Sbjct: 140 YTLT-DGRT 147
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 46 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 222
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 223 VKQRLIKVDGK 255
+ + VDG+
Sbjct: 66 LNNGKVLVDGR 76
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 49 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 228
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 229 QRLIKVDGK 255
QR + V+G+
Sbjct: 62 QRDVLVNGR 70
Score = 41.1 bits (92), Expect = 0.023
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 282 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 422
G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 80 GVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/73 (38%), Positives = 35/73 (47%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VR D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 70 KVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKS 129
Query: 432 NVPYLVTHDGRTI 470
V L DGR I
Sbjct: 130 GVLQLNLEDGRNI 142
Score = 43.6 bits (98), Expect = 0.004
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 232 RLIKVDGK 255
+ VDGK
Sbjct: 63 GKVLVDGK 70
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 232 RLIKVDG 252
+ VDG
Sbjct: 63 GKVLVDG 69
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 258 RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNV 437
R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 72 RKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGK 130
Query: 438 PYLVTHDGRTI 470
L +DG I
Sbjct: 131 IQLNLNDGTNI 141
Score = 33.5 bits (73), Expect = 4.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 512 LDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDI 631
L I ++ +KFE GNL M+ GG++ G G R++
Sbjct: 155 LSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREV 194
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 232 RLIKVDG 252
+ VDG
Sbjct: 64 GNVLVDG 70
Score = 36.7 bits (81), Expect = 0.50
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 258 RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 410
R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 73 RKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Score = 35.9 bits (79), Expect = 0.87
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 512 LDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
L + K++ IK+E GNL MI GG + G VG+
Sbjct: 156 LSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGS 188
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.3 bits (90), Expect = 0.040
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 52 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 231
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 232 RLIKVDGK 255
+ ++GK
Sbjct: 63 DNVLINGK 70
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 38.3 bits (85), Expect = 0.16
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 58 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 237
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 238 IKVDGK 255
+ VDGK
Sbjct: 66 VMVDGK 71
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 36.3 bits (80), Expect = 0.66
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = -3
Query: 509 DGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 330
+G+ D + V +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 329 TKQFISLLN*DNI 291
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 35.9 bits (79), Expect = 0.87
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 49 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 228
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 229 QRLIKVDG 252
++VDG
Sbjct: 68 SGNVEVDG 75
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.5
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -1
Query: 163 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 17
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 4.6
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 218 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 48
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 47 LGPRAML 27
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_A5FU38 Cluster: Lytic transglycosylase, catalytic
precursor; n=1; Acidiphilium cryptum JF-5|Rep: Lytic
transglycosylase, catalytic precursor - Acidiphilium
cryptum (strain JF-5)
Length = 228
Score = 33.1 bits (72), Expect = 6.1
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 84 DVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHKG*WEVRT 263
+ G W+ V+R A+ + P P +S + K SP + ++PH W+V
Sbjct: 130 NTGSAWQGFQNGYVSRVVSTAKYVVPEIDPADSVQA---PKASPSSASSSPHPPAWDVFP 186
Query: 264 DPTYPAGF 287
+ PAGF
Sbjct: 187 NSIGPAGF 194
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 8.1
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 85 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 246
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,298,016
Number of Sequences: 1657284
Number of extensions: 14972150
Number of successful extensions: 41374
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41363
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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