Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00288
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 155 5e-39
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 155 5e-39
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 154 1e-38
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 4.2
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 4.2
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 23 7.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 155 bits (376), Expect = 5e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
VP+LVTHDGRTIRYPDPLIKVND+I
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTI 160
Score = 126 bits (305), Expect = 2e-30
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V I+ QRLIKVDGK
Sbjct: 61 VKAILMQRLIKVDGK 75
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
P P + +L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
+G G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 155 bits (376), Expect = 5e-39
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
VP+LVTHDGRTIRYPDPLIKVND+I
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTI 160
Score = 125 bits (301), Expect = 7e-30
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V I+ QRLI+VDGK
Sbjct: 61 VKAILMQRLIQVDGK 75
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
P P + +L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
+G G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 154 bits (373), Expect = 1e-38
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
VP+LVTHDGRTIRYPDPLIKVND+I
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTI 160
Score = 126 bits (305), Expect = 2e-30
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V I+ QRLIKVDGK
Sbjct: 61 VKAILMQRLIKVDGK 75
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 610
P P + +L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
+G G IV RE H GSF+I+H+KD
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKD 212
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 291 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 467
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 468 IR 473
++
Sbjct: 1778 LK 1779
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 63 LKRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 242
LK S+++ + + + R P V+ P P E FDR+ N +
Sbjct: 336 LKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVEVPAPTFDRRNVSRNSNNNSPE 395
Query: 243 G*WEVRTDPT 272
G RT+PT
Sbjct: 396 GYDNNRTNPT 405
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 458 WPHHPLPRPTYQSQR 502
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 268 GSVLTSHQPL*GVVSQFSGLRFRSKHTSDDSSGKSPGASTRATCGDRLTVSVHT 107
G VL++ + G + + L ++ HTS SP AST ++ V HT
Sbjct: 269 GDVLSNREWEAGKIDAMNSLIAQNLHTSASQVSLSPMASTASSSVTNSPVDTHT 322
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 22.6 bits (46), Expect(2) = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 176 LRKITRGKHSRNLWGPVDGLGAYTPPSLS 90
++++TR H N+W V G P +S
Sbjct: 201 IKEVTRRCHLENVWQAVYTAGVLLPSPVS 229
Score = 21.0 bits (42), Expect(2) = 7.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 293 IHKSSRISRVSPNFPSTFMRRC 228
IHK R R++P RRC
Sbjct: 187 IHKKLRSKRLTPLLIKEVTRRC 208
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 386 SLLRGDTVDCESALNIID*TKQ 321
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,857
Number of Sequences: 5004
Number of extensions: 60318
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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