Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00288
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 133 1e-31
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 130 1e-30
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 129 2e-30
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.82
12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691 29 3.3
11_01_0156 - 1290361-1290876,1291095-1291201,1292027-1292105,129... 29 3.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.3
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.4
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 29 4.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 133 bits (321), Expect = 1e-31
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K
Sbjct: 91 KVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQK 150
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+P+L T+DGRTIRYPDPLIK ND+I
Sbjct: 151 GIPFLNTNDGRTIRYPDPLIKANDTI 176
Score = 122 bits (293), Expect = 3e-28
Identities = 54/74 (72%), Positives = 62/74 (83%)
Frame = +1
Query: 34 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 213
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 214 LKIVKQRLIKVDGK 255
+ I+ QR + VDGK
Sbjct: 78 ISILMQRHVMVDGK 91
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P ++ ++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 166 PDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVG 209
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 595 GACGHIVSRERHPGSFDIVHIKD 663
G G I SRE+H GSF+ +H++D
Sbjct: 206 GRVGVIKSREKHKGSFETIHVED 228
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 130 bits (313), Expect = 1e-30
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PYL T+DGRTIRYPDPLIK ND+I
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTI 160
Score = 124 bits (299), Expect = 6e-29
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V+ I+ QR + VDGK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P ++ ++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 595 GACGHIVSRERHPGSFDIVHIKD 663
G G I +RE+H GSF+ +H++D
Sbjct: 190 GRVGVIKNREKHKGSFETIHVED 212
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 129 bits (311), Expect = 2e-30
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +3
Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
+VRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
+PYL T+DGRTIRYPDP+IK ND+I
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTI 160
Score = 124 bits (299), Expect = 6e-29
Identities = 55/75 (73%), Positives = 64/75 (85%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VLKIVKQRLIKVDGK 255
V+ I+ QR + VDGK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
P P ++ ++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 150 PDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 595 GACGHIVSRERHPGSFDIVHIKD 663
G G I +RE+H GSF+ +H++D
Sbjct: 190 GRVGVIKNREKHKGSFETIHVED 212
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 175 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 74
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691
Length = 461
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -3
Query: 512 TDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID 333
TDG D W V GAA RY + +H++++ L L LL + C +A+ + D
Sbjct: 117 TDGAADAAMWPDVGSGAAAPRYPGG---LNQQHSVEY-WLTLDLLSSSSPPCGAAVRVAD 172
>11_01_0156 -
1290361-1290876,1291095-1291201,1292027-1292105,
1292609-1293523
Length = 538
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -3
Query: 512 TDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID 333
TDG D W V GAA RY + +H++++ L L LL + C +A+ + D
Sbjct: 117 TDGAADAAMWPDVGSGAAAPRYPGG---LNQQHSVEY-WLTLDLLSSSSPPCGAAVRVAD 172
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 188 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 60
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 147 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 34
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 631 DVSRGTRCAHTPQVTASRDHTQVPRLKLDEVHNLRSCD 518
DV+RG C HT T + P L +D ++ CD
Sbjct: 793 DVARGMNCLHTSVPTIVHRDLKSPNLLVDNNWTVKVCD 830
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 72 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 236
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 324 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 428
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,140,720
Number of Sequences: 37544
Number of extensions: 437923
Number of successful extensions: 1342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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