Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00288
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   8e-36
SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)                    29   3.4  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.5  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   5.9  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  147 bits (356), Expect = 8e-36
 Identities = 66/75 (88%), Positives = 70/75 (93%)
 Frame = +1

Query: 31  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 211 VLKIVKQRLIKVDGK 255
           V KIVKQRLIK+DGK
Sbjct: 485 VKKIVKQRLIKIDGK 499



 Score =  142 bits (345), Expect = 2e-34
 Identities = 64/86 (74%), Positives = 74/86 (86%)
 Frame = +3

Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
           +VRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAK 558

Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
            VPY+VTHD RTIRYPDP IKVND++
Sbjct: 559 GVPYIVTHDARTIRYPDPNIKVNDTV 584



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/44 (47%), Positives = 31/44 (70%)
 Frame = +2

Query: 476 PRPTYQSQRFHQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 607
           P P  +      +DI T K++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVG 617



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 592 LGACGHIVSRERHPGSFDIVHIKD 663
           +G  G +  RE+H GSFDIVH+KD
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKD 636


>SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 573

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = -1

Query: 412 RLTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINPAG*VGSVLTSHQPL*G 233
           R     +++AS  VI  I ++     IR + SL+ S   +  N  G +        P+ G
Sbjct: 320 RFGARQVFIASRHVITTIPSMHRARYIRDSGSLLSSAVESYANYFGIIQLCSIGFGPILG 379

Query: 232 VVSQFSGLRFRSK-HTSDDSSGKSPGASTRATCGD 131
            V   SG R   +  ++DDSS     +++ ATC D
Sbjct: 380 FVIS-SGKRVSKRLDSTDDSSSMIIQSNSSATCKD 413


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 174 EES--SEVCFDRKRSPENCE 227
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 173 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 21
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 251 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 135
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,923,245
Number of Sequences: 59808
Number of extensions: 494660
Number of successful extensions: 1182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)