Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00288
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   121   4e-28
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.1  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    27   9.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  121 bits (292), Expect = 4e-28
 Identities = 55/86 (63%), Positives = 66/86 (76%)
 Frame = +3

Query: 252 EVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
           +VRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K
Sbjct: 74  KVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNK 133

Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSI 509
            VP L T DGRTIRYPDP +KVND+I
Sbjct: 134 GVPVLTTTDGRTIRYPDPHVKVNDTI 159



 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/73 (72%), Positives = 60/73 (82%)
 Frame = +1

Query: 37  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 216
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 217 KIVKQRLIKVDGK 255
           KI+ QR+++VDGK
Sbjct: 62  KILTQRVVRVDGK 74



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +2

Query: 515 DIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDIPAPSTL 649
           +I+T KI D +KFE GNL  +TGGRN+GRVG       +P  S +
Sbjct: 162 NISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDI 206



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +1

Query: 565 LVYDHGRP*LGACGHIVSRERHPGSFDIVHIKD 663
           L Y  G   +G  G I  RER PG+ DI+HIKD
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKD 211


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 348 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 479
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 505  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 341
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 174  EESSEVCFDRKRSPENCETTPHKG*WEVRTD 266
            EE SE   +R+RS    E++ H G  EVR D
Sbjct: 2386 EEGSETYEERERSDSPSESSEHAGDEEVRDD 2416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,790
Number of Sequences: 27780
Number of extensions: 355006
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)