Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00287
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44) 104 4e-23
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088) 58 5e-09
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 31 0.71
SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19) 30 1.2
SB_46163| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10) 28 5.0
SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45400| Best HMM Match : MAM (HMM E-Value=0) 28 5.0
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_40604| Best HMM Match : OATP (HMM E-Value=1.5) 27 8.8
SB_26540| Best HMM Match : UBA (HMM E-Value=6.2) 27 8.8
SB_25636| Best HMM Match : UBA (HMM E-Value=6.9) 27 8.8
SB_24878| Best HMM Match : JTB (HMM E-Value=1.6) 27 8.8
SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_42177| Best HMM Match : UBA (HMM E-Value=6.9) 27 8.8
SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19) 27 8.8
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8) 27 8.8
>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
Length = 210
Score = 104 bits (250), Expect = 4e-23
Identities = 45/76 (59%), Positives = 58/76 (76%)
Frame = +2
Query: 38 EQKVGVNRVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKW 217
E+K V ++Y+FLGLV LYL+FG+GA+LI +GF YPAY S+KA+ES QKDDDT+W
Sbjct: 33 EEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFAYPAYQSVKAVESVQKDDDTQW 92
Query: 218 LTYWVVYACFSIGSTF 265
L YWVV+A F+I F
Sbjct: 93 LIYWVVFASFNIVEFF 108
Score = 70.1 bits (164), Expect = 1e-12
Identities = 26/60 (43%), Positives = 39/60 (65%)
Frame = +1
Query: 256 EYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRIDDMANTV 435
E+FSD ++ WFPLY+L K IF+ WC P +NGS +Y ++I+P+ +H +ID V
Sbjct: 106 EFFSDILLSWFPLYFLTKLIFLGWCMAPVSWNGSDTLYQKVIKPFVLRHQSQIDSTLEKV 165
>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
Length = 110
Score = 57.6 bits (133), Expect = 5e-09
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 59 RVYIFLGLVAFTGLYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW 229
R+ + L +V FT LY+ G+ A CN I V+P Y S+ A+E+P + TKWL YW
Sbjct: 55 RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFPVYASISAIENPDYEIGTKWLMYW 110
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 30.7 bits (66), Expect = 0.71
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 153 TKPIELHINSAPKPNTKYKPVNATKPKKMYTLFTPTFCSA 34
T+P+ H S+P+P + + PVN T P TP +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263
>SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 30.3 bits (65), Expect = 0.94
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 352 GSLVIYYRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
G+ I++ +++PY HG IDD + + WL V R N
Sbjct: 129 GANFIWHWMLKPYGFCIHGCIDDYSRRIMWLEVGRTNN 166
>SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFNL 468
Y +RP+ HG ID + V WL VTR NL
Sbjct: 225 YDKLRPFGFPVHGCIDGFSRKVMWLYVTRSNNL 257
>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
Length = 381
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 234 CTPVFLSGVLFRFHRRLVSIVLAV 305
CTP+FLS + FHR L+ + +A+
Sbjct: 76 CTPIFLSEIPLVFHRNLIELDVAL 99
>SB_46163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFNL 468
Y ++P+ HG ID + V WL VTR NL
Sbjct: 131 YDKLKPFGFPVHGCIDGFSRKVMWLYVTRSNNL 163
>SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFNL 468
Y ++P+ HG ID + V WL VTR NL
Sbjct: 196 YDKLKPFGFPVHGCIDGFSRKVMWLYVTRSNNL 228
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 231 TQYVSHFVSSSFCGDSRAFIDMYAGYTK 148
T +V HFV + FCG++R+ + + + +
Sbjct: 774 TAFVRHFVLARFCGENRSIVINFRSFNR 801
>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
Length = 98
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 58 QSVHFLRLGRVHRFIFSVRFRS*INMQLDRLRVPRVHVYEGSGVAAEG*RYKMA 219
Q H+L L R+HR +V ++M+ D Y VAAE +Y+++
Sbjct: 40 QGEHWLGLDRIHRLTNAVASELRVDMEADAGETAHAQ-YSHFSVAAESDKYRLS 92
>SB_42585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 58 QSVHFLRLGRVHRFIFSVRFRS*INMQLDRLRVPRVHVYEGSGVAAEG*RYKMA 219
Q H+L L R+HR +V ++M+ D Y+ VAAE +Y+++
Sbjct: 138 QEEHWLGLDRIHRLTNAVASELRVDMEADAGETAHAQ-YDHFSVAAETDKYRLS 190
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 277 VGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 369
+G F +++ +C CY+P + NGS IY
Sbjct: 386 IGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416
>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
Length = 257
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 310 CIFVIWCYLPTEYNGSLVIYYRIIRP 387
C+ + CY + YN + +YY +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187
>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = -1
Query: 174 IDMYAGYTKPIELHINSAPK----PNTKYKPV---NATKPKKMYTLFTPTF 43
++MYA T+ + ++ N+ P PNT N T+P MY TP+F
Sbjct: 309 LNMYANTTQSLAMYPNTTPSLAMYPNTTPSLAMYPNTTQPLAMYPNTTPSF 359
>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 58 QSVHFLRLGRVHRFIFSVRFRS*INMQLDRLRVPRVHVYEGSGVAAEG*RYKMA 219
Q H+L L R+HR +V ++M+ D Y VAAE +Y+++
Sbjct: 282 QGEHWLGLDRIHRLTNAVASELRVDMEADAGETAHAQ-YGHFSVAAESEKYRLS 334
>SB_40604| Best HMM Match : OATP (HMM E-Value=1.5)
Length = 142
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 98 LYLVFGFGAELICNSIGFVYPAY-MSMKA-LESPQ----KDDDTKWLTYWVVYACFSIGS 259
+YL F + A ++ +GFV Y +SM L+ P DD +W+ W + F IG
Sbjct: 40 IYLSFWYAATILGPGLGFVVGGYFLSMFVDLKQPSGVNVDADDPRWIGAW--WLGFVIGG 97
Query: 260 TFPISSSAG 286
+ S+ G
Sbjct: 98 SMLFVSAFG 106
>SB_26540| Best HMM Match : UBA (HMM E-Value=6.2)
Length = 207
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 140 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171
>SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)
Length = 205
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 140 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171
>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
Length = 603
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 408 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 439
>SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 140 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171
>SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 80 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 111
>SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 267 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 298
>SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)
Length = 266
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 203 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 234
>SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)
Length = 339
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 140 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171
>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 244 FFYREYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIR 384
F Y Y S I +FPL F++W Y E GSL + + +R
Sbjct: 879 FVYFTYVSVIIPAFFPLI----SAFLLWVYCSGESTGSLSSFKQAMR 921
>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
Length = 427
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 370 YRIIRPYYQKHHGRIDDMANTVAWLVVTRLFN 465
Y ++PY H ID + V WL VTR N
Sbjct: 342 YDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 373
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,729,945
Number of Sequences: 59808
Number of extensions: 398859
Number of successful extensions: 1390
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -