Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00287
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.45 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 MANTVAWLVVTRLFNLRPLAVR 486
           MAN V WL+   LF L+ +A++
Sbjct: 1   MANVVPWLLSICLFGLQEIAIQ 22


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 141 ELHINSAPKPNTKYKPVN 88
           ++H    PKP TK KP +
Sbjct: 244 KVHATKPPKPQTKTKPTS 261


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 359 W*STTVSFVLTTRS 400
           W STT SFVL  R+
Sbjct: 349 WISTTTSFVLNNRA 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,117
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)