Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00285
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.58 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 216 PLAINNLLSTSSMGSSYNFSAA 151
           P++INN  STSS  SS + +AA
Sbjct: 158 PVSINNNTSTSSSASSPSVTAA 179


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 269 RSYPSLEHVSDHQFYLVGRWLSIISFPPLLWD 174
           +SY  L+  + +++Y   + L  I++PP  W+
Sbjct: 22  QSYNFLQEKTTYEYYENNQALPPITYPPSDWN 53


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 13  VKVEAKKNIRNSCRK 57
           VKVE ++N  NSC K
Sbjct: 188 VKVENRRNSPNSCEK 202


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 269 RSYPSLEHVSDHQFYLVGRWLSIISFPPLLWD 174
           +SY  L+  + +++Y   + L  I++PP  W+
Sbjct: 13  QSYNFLQEKTTYEYYENNQALPPITYPPSDWN 44


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 13  VKVEAKKNIRNSCRK 57
           VKVE ++N  NSC K
Sbjct: 136 VKVENRRNSPNSCEK 150


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 13  VKVEAKKNIRNSCRK 57
           VKVE ++N  NSC K
Sbjct: 319 VKVENRRNSPNSCEK 333


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 185 LLWDPHIIFLQLDEDSVL 132
           LLW P +IF+ L ++ ++
Sbjct: 118 LLWTPAVIFVVLSKNGIV 135


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 111 KPHPAPINKLPIAIALP 61
           KP    I K+PIAI  P
Sbjct: 264 KPLNLTIKKMPIAIVAP 280


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 111 KPHPAPINKLPIAIALP 61
           KP    I K+PIAI  P
Sbjct: 156 KPLNLTIKKMPIAIVAP 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,025
Number of Sequences: 336
Number of extensions: 2487
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)