Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00284
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    29   0.46 
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    26   4.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.4  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   7.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.8  

>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 104 CGFYFHNASITQNLRRAAEKLYEDPIEEVERRLLIASGLPNRTGDQIRALKMDMSAPI 277
           CG Y  +ASI   +++A    YE  +EEVE++L     L     D + +L+ D+ AP+
Sbjct: 183 CGIYIFDASIFDEIKKA----YERRLEEVEKQL---RSLDEGMEDYL-SLETDVLAPL 232


>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +2

Query: 59  FGSAIAIGSLLIGAGCGFYFHNASITQNLRRAAEKLY---EDPIEEVERRLLIASGLPNR 229
           F   +   +L++G G G Y H + I    ++  ++ Y   E  IE  +   L     P +
Sbjct: 9   FTKTLRWSALVLGLGAGMYEHRSHIQCQKQKEIDENYHRQESLIESAKIAYLNTKNTPPK 68

Query: 230 TGDQIRALKMD 262
               +  LK D
Sbjct: 69  EDSMLPNLKKD 79


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 176 PIEEVERRLLIASGLPNRTGDQIRALKMDMSAPIG 280
           PI E +   L+ SGL  + G+++  L +    P+G
Sbjct: 558 PISEEQIEELLNSGLDEQEGEKLLVLHVSEKDPVG 592


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 44  TPAGKFGSAIAIGSLLIGAGCGF 112
           +P G+F  A   G  LI AGC F
Sbjct: 145 SPEGQFEKAYEKGKRLIRAGCAF 167


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 83   SLLIGAGCGFYFHNASITQNLRRAAEKLY 169
            SL +    G   H+A +T+N R+ +E+L+
Sbjct: 1414 SLKLALPFGIALHHAGLTENDRKISEELF 1442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,800
Number of Sequences: 5004
Number of extensions: 38801
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)