Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00284
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           33   0.21 
SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)                   29   1.9  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       28   5.8  

>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 122 NASITQNLRRAAEKLYEDPIEEVERRL-LIASGLPNRTGDQIRALKMDMSA 271
           NA + +NLR A EKL E    E+++ L  + SG  N + +Q+R LK ++ A
Sbjct: 728 NAQLRRNLRMANEKLQEQ--REIQQSLEELKSGHTNVSFEQVRQLKSELEA 776


>SB_38691| Best HMM Match : UPF0014 (HMM E-Value=2.2)
          Length = 430

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -1

Query: 227 YLVGRWLSI---ISFPPLLWDPHIIFLQLDEDSVL 132
           +LVG+W+++    S  PLL++  ++ +Q DED V+
Sbjct: 334 WLVGQWVNVKLTASVRPLLYESLLLLMQKDEDLVM 368


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 2  GIDTSKWKPRKISGTPAGK 58
          G+D S W P KI G PA K
Sbjct: 34 GVDQSLWSPNKILGIPATK 52


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 164  LYEDPIEEVERRLLIASGLPNRTGDQIRALKMDMSAPIG 280
            ++ +P +++  R L A   PNR G  + A +   SAP G
Sbjct: 1304 VFNNPRDQLGCRNLAAQAFPNRVGFVMDAFRQATSAPYG 1342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,299
Number of Sequences: 59808
Number of extensions: 267376
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)