Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00284
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    29   1.6  
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z...    29   1.6  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   3.6  
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    27   6.3  
At2g22510.1 68415.m02670 hydroxyproline-rich glycoprotein family...    27   6.3  
At4g09080.1 68417.m01497 chloroplast outer membrane protein, put...    27   8.3  

>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = -1

Query: 230 FYLVGRWLSIISFPPLLWDPHIIFLQLD------EDSVLCSHYE 117
           + +  RW  ++ F PL W P ++F  L       E +  CSH +
Sbjct: 131 YEITTRWTMVMKFIPLPWKPELVFTGLSIMEVNPETNKFCSHLD 174


>At1g51550.1 68414.m05802 F-box family protein similar to F-box
           ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
           [Arabidopsis thaliana]
          Length = 478

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 17  KWKPRKISGTPAGKFG-SAIAIGSLLI 94
           KWK  K SGTP+G+FG + I IG  L+
Sbjct: 165 KWKKVK-SGTPSGRFGHTCIVIGEYLL 190


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 108 PHPAPINKLPIAIALPNFPA---GVPDI 34
           P+P+P+  LPI   LPN P     VPD+
Sbjct: 193 PNPSPLPNLPIVPPLPNLPVPKLPVPDL 220


>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 269 RSYPSLEHVSDHQFYLVGRWLSIISFPPLLWDPHIIFLQLDEDS 138
           RS    E V DHQ + +      +S P LL D  I FLQ+ + S
Sbjct: 34  RSLQVQETVEDHQSFALEEEEQQLSTPSLLQDTTIPFLQMLQQS 77


>At2g22510.1 68415.m02670 hydroxyproline-rich glycoprotein family
           protein similar to proline-rich cell wall protein
           [Gossypium barbadense] gi|451544|gb|AAA79364; contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 124

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 108 PHPA-PIN--KLPIAIALPNFPAGVPDIFLGFHFDVSIP 1
           P+PA PIN    P  I +PNFP  +P+ F  F+   SIP
Sbjct: 77  PNPAQPINIPNFP-QINIPNFPISIPNNF-PFNLPTSIP 113


>At4g09080.1 68417.m01497 chloroplast outer membrane protein,
           putative similar to chloroplastic outer envelope
           membrane protein (OEP75) [Pisum sativum] GI:633607
          Length = 407

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 11  TSKWKPRKISGTPAGKFGSAIAIGSLLIGAGCGFYFHNASITQNLRRAAEKLYEDPIEEV 190
           TS +  RK+S    G  G    +  + +G  C      A+IT+NL R  E  Y    EE+
Sbjct: 122 TSFFNSRKLSPVFTGGPGYEDLVPPMFVGRDC----LKATITENLTRQRELTYGVMFEEI 177

Query: 191 ERR 199
             R
Sbjct: 178 ITR 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,764
Number of Sequences: 28952
Number of extensions: 193790
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)