Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00283
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    32   0.094
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    29   0.66 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.2  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   8.2  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 621 YQ*WRDISREGTYQGKHTILVNKGLR*GIILF 716
           Y  +RD+S E    G HT  V KGL+ G +LF
Sbjct: 65  YLWFRDMSTEANIHGAHTKAVTKGLKIGFMLF 96


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 419 PSNPGSSTTYTE--YDLYQFLGILLYMSVQKYPS 324
           PS    S  YTE  +  + FLG+LL++  Q+YP+
Sbjct: 176 PSGIYMSVGYTESLFAAFSFLGLLLFIKKQQYPA 209


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 228 NNNELHKPIGHPE-HDRLFKIRIVIQQFNERFATVPMNQRLSVDEQMCSTKIGHFLNQYL 52
           NN     P G+P  +DR+  +   I  F+    TVP N   +++    S   G   +  L
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 51  LN 46
           +N
Sbjct: 378 MN 379


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = -2

Query: 243 LLLHFNNNELHKPIGHPEHDRLFKIRIVIQQFNERFATVPMNQRLSVDEQMC 88
           L  HFN +     I     D++  + +VI    E     P N  L+  ++ C
Sbjct: 72  LYTHFNESNRSDDINFDNRDQVGLVMLVITVILENITDSPWNAYLNTLDETC 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,417
Number of Sequences: 5004
Number of extensions: 50227
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)