Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00283
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0532 - 34562151-34562225,34562958-34563161                       29   2.8  
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    29   4.9  
03_01_0333 + 2624073-2625185                                           28   8.5  

>03_06_0532 - 34562151-34562225,34562958-34563161
          Length = 92

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 32  HLWGLLSKY*FRKCPIFVEHICSSTLSL*FIGTVANLSLNCWITMRILNSLSC 190
           H W  LS    RK  IF+   CS+ L +   G  A +  +C I     ++ SC
Sbjct: 38  HKWAFLSDMSPRKFVIFLAGRCSNQLKMKLQGWHAQMMASCHICSADASNFSC 90


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 34  SMGLIK*VLIQKVPYFCRTHLFIHA*SLIHWHCSKPFIELLDYNADFK*SVV 189
           +MG +  V + +VPY C+TH  ++    ++ HC    +  +  N D K  V+
Sbjct: 160 TMGTMADVSLARVPYHCKTH-SVYLRGALYMHCQNDCVIKITLN-DHKYRVI 209


>03_01_0333 + 2624073-2625185
          Length = 370

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -2

Query: 207 PIGHPEHDRLFKIRIVIQQFNERFATVPMNQRLSVDEQMCS----TKIGHFLNQYLLNKP 40
           P+     +RL     +++ +N  F  +  ++ LSVD+  CS        H +    LNKP
Sbjct: 51  PVAASTMERLQLPNPILRLWNRYFFPLSEHKILSVDKSGCSLLFDANTRHLVTMPFLNKP 110

Query: 39  HRWGFKLYV 13
            R    L+V
Sbjct: 111 KRDPISLFV 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,914
Number of Sequences: 37544
Number of extensions: 250538
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)