Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00283
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF098997-1|AAC68718.1|  160|Caenorhabditis elegans Hypothetical
           protein T10D4.7 protein.
          Length = 160

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 428 YIIPSNPGSSTTYTEYDLYQFLGILLYMS---VQKYPSKRSY 312
           Y++P N    +T T  D++ F GI+   S   + KYP+  SY
Sbjct: 87  YLMPPNATPGSTPTGIDIFSFFGIICENSTWYITKYPNGYSY 128


>AF077539-2|AAK84579.2|  427|Caenorhabditis elegans Hypothetical
           protein T25D3.3 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 195 PEHDRLFKIRIVIQQFNERFAT-VPMNQRLSVDEQMCSTKIGHFLNQY 55
           P+     K+R + +Q  E F   VP++ RL + EQ+  +  G F+NQ+
Sbjct: 145 PDTIEQVKVRRIEEQ--EGFVVRVPISDRLIIAEQLAKSTGGFFMNQF 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,433
Number of Sequences: 27780
Number of extensions: 260978
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)