Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00283
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.7  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 119 FIGTVANLSLNCWITMRILN 178
           F G V + SL CW   R+L+
Sbjct: 316 FFGLVGDTSLACWNENRLLD 335


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 240 LLHFNNNELHKPIGH 196
           LL F N E H PI H
Sbjct: 72  LLRFENPETHHPIRH 86


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 228 NNNELHKPIGHPEHDRLFKIRIVIQQFNERFATVPMNQ-RLSVDEQMCSTKIGHFLNQYL 52
           NN+E  + +    +   F +   + + N   A   MN+  L++ +   +  +G F  +  
Sbjct: 449 NNHEYKRSVSRESNSNQFILMTTVNEGNNNMAATYMNECLLNIQKSPRTLTLGIFAEKLR 508

Query: 51  L 49
           L
Sbjct: 509 L 509



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 464 IFINSLVEQTNLYIIPSNPGSSTTYTEYDLYQFLGILLYMSVQKYPSKRSY-WS 306
           IF+  LV   +  ++ +   S  T T Y L+      L + +   P +  Y WS
Sbjct: 63  IFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLISGLPPEIYYIWS 116


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 119 FIGTVANLSLNCW 157
           F+G V N ++ CW
Sbjct: 316 FVGLVGNSAVGCW 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,959
Number of Sequences: 438
Number of extensions: 3738
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)