Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00283
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    36   0.027
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    28   5.4  
At3g43920.1 68416.m04701 ribonuclease III family protein similar...    28   7.1  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    27   9.4  
At1g28530.2 68414.m03507 expressed protein                             27   9.4  
At1g28530.1 68414.m03508 expressed protein                             27   9.4  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 630 WRDISREGTYQGKHTILVNKGLR*GIILF 716
           WRD+ RE T +G HT +V  G R G ILF
Sbjct: 61  WRDVLRESTLEGHHTKVVQLGPRYGSILF 89


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 107 LSL*FIGTVANLSLNCWITMRILNSLS-CSG*PI 205
           L L  +GTVA +S++ W+ + IL   S C G P+
Sbjct: 212 LKLGVVGTVATISISWWVNVLILLVYSTCGGCPL 245


>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 147  NERFATVPMNQRLSVDEQMCSTKIGHFLNQYLLN--KPHRWG 28
            NE FA V +   L    Q C+T +   +N YL++  KP   G
Sbjct: 1222 NENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETG 1263


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 464 IFINSLVEQTNLYIIPSNPGSSTTYTEYDLYQFLGILLYMSVQKYPS 324
           ++ NS++  T  Y+ P    + T   + DLY F  I+L +   ++P+
Sbjct: 579 VYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPN 625


>At1g28530.2 68414.m03507 expressed protein
          Length = 506

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 403 EPGLLGIIYKFVCSTKLLMKINNNHPFHLVDYRP*LLQ 516
           EPGL     K V   +LLM +N++ PF LV  RP L Q
Sbjct: 471 EPGLKSHPPKKVVVLELLMSVNSDRPFALV--RPLLPQ 506


>At1g28530.1 68414.m03508 expressed protein
          Length = 614

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 403 EPGLLGIIYKFVCSTKLLMKINNNHPFHLVDYRP*LLQ 516
           EPGL     K V   +LLM +N++ PF LV  RP L Q
Sbjct: 579 EPGLKSHPPKKVVVLELLMSVNSDRPFALV--RPLLPQ 614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,107
Number of Sequences: 28952
Number of extensions: 229321
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)