Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00282
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.13 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          24   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           24   1.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +1

Query: 109 CRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRTPIRSRCFSPRGTC 246
           CR   SC DR  D   N  N  K  TC L+      + C    GTC
Sbjct: 115 CRNNGSCVDRIADFECNCKNGWKGKTCSLKDSHCDHTTC-KNGGTC 159


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 108 MPPTDFVPRPYTGPSYQQVEQMKGVYMPPSIT 203
           +PP  + P  +  P Y     M  V   P++T
Sbjct: 42  LPPITYPPSDWNCPQYNAPPYMSSVLQLPTVT 73


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 318  WPTETVTIPPNRSRYLLPSLSL-TTACAPG*EAP 220
            WPT+  TIPP     ++P +   +  C PG   P
Sbjct: 1079 WPTQGTTIPP--PAVVMPEVDKPSQPCEPGQYVP 1110



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 262  RRQEIPGSVRWNRHRLRGPLSSESKCSPQR 351
            R+Q   G + WN+ R        +KC  ++
Sbjct: 1127 RKQYCAGGLHWNKERKICDWPKSAKCEEKK 1156


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 108 MPPTDFVPRPYTGPSYQQVEQMKGVYMPPSIT 203
           +PP  + P  +  P Y     M  V   P++T
Sbjct: 33  LPPITYPPSDWNCPQYNAPPYMSSVLQLPTVT 64


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 105 KMPPTDFVPRPYTGPSYQ-QVEQMKGVYMPPSITNA--YKKPVLLTQGHMQWLTTTTA 269
           K+ P D  P PY G  ++  +  +   Y+ P+   A  ++  +    G M W   +T+
Sbjct: 390 KVEPRDKAPSPYGGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPPIGGMMNWNMPSTS 447


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 103 AVLYVLTMSKHNFVPLLAISMC 38
           AVLY + M  H F      +MC
Sbjct: 483 AVLYTIHMGYHGFHNPFTCNMC 504


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 299 RFHRTDPGISCRRCR*PLHVPLG 231
           RF  T+PG     C    HV +G
Sbjct: 591 RFKATNPGYWLFHCHIEFHVEVG 613


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,857
Number of Sequences: 336
Number of extensions: 4100
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)