Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00282
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    57   2e-09
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    54   1e-08
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    50   2e-07
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    41   1e-04
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    34   0.021
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    33   0.048
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    31   0.15 
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    31   0.19 
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    29   0.59 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   1.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   3.1  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   7.2  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   7.2  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   9.5  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   9.5  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   9.5  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   9.5  

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = +2

Query: 236 GAHAVVNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRHP--KIY 406
           G  + + D +G++Y+D   G+   S+GH HP+V     DQ   L H++NL Y  P  ++ 
Sbjct: 61  GEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLVHSSNLFYNEPAIELS 120

Query: 407 EYVEQLAAKLPG--DLNVVYLVNSGSEANELATLLAKVHRKPRHHIAADQLPRLHQQPHG 580
             +    AK  G      ++  N G+EANE A   A+     ++     Q+   +   HG
Sbjct: 121 NVINNSLAKNSGIAGPTKIFFANCGTEANETALKFARKAAFEKYGEGKSQIVYFNNSFHG 180


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 251 VNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 430
           V D      LD   G ++  +GH HP + A ++  L  L H  + +  P + +   +L+ 
Sbjct: 44  VYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSPPVVQLATELSD 103

Query: 431 KLPGDLNVVYLVNSGSEANELATLLAKVH 517
            LP  L+    +++G EANE A  +AKV+
Sbjct: 104 LLPDGLDKTLFLSTGGEANEAALRMAKVY 132



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 513 YTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYHAVHPD 653
           YT   + ++  +S+HG T     LT   + R   P  PG Y    P+
Sbjct: 132 YTNKYECVAFSSSWHGVTGGAASLTFAAARRGYGPALPGSYTIPEPN 178


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 37/138 (26%), Positives = 62/138 (44%)
 Frame = +2

Query: 137 VHGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVNDNDGKRYLDLFGGIVTVSVG 316
           +H TF         + +AA N+  L    +   GA   V D +G+ YLD       V+ G
Sbjct: 7   LHNTFSTEQIEVLENEYAAHNYHPLPVCFSKAKGAK--VWDPEGREYLDFLSAYSAVNQG 64

Query: 317 HCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELA 496
           HCHPK+  AL +Q   +  ++  + + K   + + +         +V  +N+G+EA E A
Sbjct: 65  HCHPKIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYF--GYEMVIPMNTGAEAVETA 122

Query: 497 TLLAKVHRKPRHHIAADQ 550
             LA++       I  D+
Sbjct: 123 CKLARLWGYKAKKIPTDE 140


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
 Frame = +2

Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKV-NAALKDQL-DVLWHTTNLYRHP-KIYEYV--EQ 421
           D DG   LD++  I T+ +G+ +P +  AA  D++  +L +   L  +P K +  V  E 
Sbjct: 65  DLDGNVLLDVYSQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEG 124

Query: 422 LAAKLPGDLNVVYLVNSGSEANELATLLAKVH---RKPR 529
                P     VY   SGS+ANE+A  LA +H    KPR
Sbjct: 125 AIKYAPKGQKYVYFQMSGSDANEIAYKLAMLHHFNNKPR 163


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +2

Query: 263 DGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRHPKIYEYVEQLAAKLP 439
           DG R +D  GG     +GH + +V  A+  Q + + +  ++ + +    +    L ++ P
Sbjct: 43  DGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSNEPADKLANLLVSEHP 102

Query: 440 GDLNVVYLVNSGSEANELATLL-----AKVHRKPRHHIAA 544
                 Y  NSGSEA E    L       V  K R HI A
Sbjct: 103 DVFARAYFANSGSEAVETCLKLILQYWQLVGEKQRCHIIA 142


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 26/102 (25%), Positives = 42/102 (41%)
 Frame = +2

Query: 236 GAHAVVNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYV 415
           G  + + D DG  Y D    +     GH +P +  AL    D +  +       ++  Y 
Sbjct: 58  GYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTCEL-NYA 116

Query: 416 EQLAAKLPGDLNVVYLVNSGSEANELATLLAKVHRKPRHHIA 541
           E L ++    +  +   NSG+EAN  A + A+     R  IA
Sbjct: 117 EALKSRFL-SIEKIRFCNSGTEANITAIIAARKFTGKRAVIA 157


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKI-YEYVEQLAAK 433
           D  G  +LDL GG+  V+VG+ +  V   L+   D   +      +  +   +   +A  
Sbjct: 85  DEKGTEHLDLIGGVGVVTVGNNNQYVWDCLQKCFDAKLYMMGAISYRNLAAAFGRNMALL 144

Query: 434 LPGD-LNVVYLVNSGSEANE 490
            PG  L   +    G+EANE
Sbjct: 145 SPGQKLTRTWTATGGAEANE 164


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +2

Query: 416 EQLAAKLPGDLNVVYLVNSGSEANELATLLAKVHRKPRHHIAADQLPRLHQQ---PHGLD 586
           E+    LP   + V+L  +   A + A  + K+HR+P H +  D  P   Q    P G D
Sbjct: 326 EETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSD 385

Query: 587 GDPVV*D 607
           G  +V D
Sbjct: 386 GIHLVVD 392


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 416 EQLAAKLPGDLNVVYLVNSGSEANELATLLAKVHRKPRHHIAADQLPRLHQQ---PHGLD 586
           E+    LP  +  ++L  +   A + A  ++++H++P H +  D  P   Q    P G D
Sbjct: 253 EETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGAD 312

Query: 587 G 589
           G
Sbjct: 313 G 313


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 45  EMANRGT--KLCFDIVRTYSTAKMPPTDF 125
           E+ANR    KLC+ I++    A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 141  TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 230
            +G SY+ V+  + VY+ PS + A KKP ++
Sbjct: 977  SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 230 HPGAHAVVNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHT 376
           HP +H +  D+D    L     I  V     HP+    ++  L++ +HT
Sbjct: 132 HPDSHIL--DDDPSAMLSYLKKIDPVMAEQWHPRDTRKIRRSLEIYFHT 178


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 154 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCFSVEAIAIC 11
           +E P+  L  K V  +  +L  L ++     PL+ I+     EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 480 KLMNWRLCWRRYTGNLDIISL-QTSY 554
           +L +WR CW  +   L I+SL +T Y
Sbjct: 274 ELRSWRECWSVFYETLKILSLVETRY 299


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 120 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 221
           D  P P   PS Q    +    MPP +T  Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 386 YRHPKIYEYVEQLAAKLPGDLNVVY--LVNSGSEANE 490
           Y HPK +EY +++A KL G L V    LV S  +A E
Sbjct: 316 YVHPKKFEYWKEVAEKL-GFLYVASGPLVRSSYKAGE 351


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 304 GDDSTEQIQVSLAVVVVNHCMCPWVRSTGFL*AF 203
           G DS  Q Q+   + V++HC  P++   GF  AF
Sbjct: 98  GSDSKLQKQILRELGVLHHCRSPYI--VGFYGAF 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,053
Number of Sequences: 5004
Number of extensions: 62443
Number of successful extensions: 165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)