Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00282
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.5  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   2.5  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)         29   3.3  
SB_24024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   4.4  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   5.8  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            28   7.6  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/85 (37%), Positives = 47/85 (55%)
 Frame = +2

Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKL 436
           D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  + +  + E+ ++   KL
Sbjct: 3   DVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVTKL 61

Query: 437 PGDLNVVYLVNSGSEANELATLLAK 511
            G  + V  VNSG E  E A  LA+
Sbjct: 62  CG-YDKVLPVNSGVEGGETACKLAR 85


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +3

Query: 96  STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWL 254
           ST +MPP D+ P PY G S+ + +Q++  Y+ P++   YK P+ +     +W+
Sbjct: 31  STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWI 83


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 245 AVVNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 358
           A V D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 42  AYVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 193 LQSRTPIRSRCFSPRGTCSG*RQRRQEIPGSVRWNRHRLRGPLSSESKCSPQR 351
           ++ R   RSR  SPR +    R RR+    + R  R R + PL+++S+C  ++
Sbjct: 338 IERRDRRRSRSRSPRSSLG--RSRRRSSSRNRRRRRSRSKSPLNTKSQCEKEQ 388


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 370  PQYIELIFEGCIYFRMTMAHGDGDDSTEQIQVSLAVVV---VNHCMCPWVRSTGFL*AFV 200
            P   +  F GC   R T    + DD   ++ + LA+ V   +N   C W R+ GFL A  
Sbjct: 1461 PDAAKCCFSGC---RNTCVQREKDDICSRV-IDLAIAVDTSMNMDRCTWTRNLGFLRALA 1516

Query: 199  IE 194
            ++
Sbjct: 1517 LK 1518


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 162
           KWL  ++N A  SS  T   K  +  S PD T+    NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 376 RMPQYIELIFEGCIYFRMTMAHGDGDDSTEQIQVSLAVVVVNHCMC 239
           R+P+++ ++  G IY    +   D DD    +Q ++     +H  C
Sbjct: 286 RLPRWVSVVLVGAIYHPPHVTAADNDDLYNHVQATVDAYSASHPEC 331


>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
          Length = 550

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 467 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 363
           SL+IPR  PPG  R++    H F+D      Y  +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452


>SB_24024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 307 DGDDSTEQIQVSLAVVVVNHCMCPWVRSTGFL*AFVI 197
           +G+ ST+ IQV LA  VV+H    WV    +  A VI
Sbjct: 28  NGEHSTKAIQVRLACTVVDHRTKVWVDVPVYFPAVVI 64


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 189 PPSITNAY---KKPVLLTQGHMQWLTTTTARDTWICSVESSPS 308
           P + TN+Y   +KPV L+  H+Q  TT+  +   I   +++PS
Sbjct: 184 PNTTTNSYASVQKPVSLSTNHVQGYTTSIPQTNQIRGYDATPS 226


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 28   QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 198
            ++      L+EEQ   S S   T R  C    S  +RT D      N+ KE  C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 VNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 352
           V D DG   LD++  I ++ +G+ HP +  A++D
Sbjct: 158 VVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 290 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 466
           GGIVT + G CH   N+ +  + D L + +    H K+ +   Q    + G++  +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 509 KVHRKPRHHIAADQLPRLHQQP 574
           +VH+ PR+ + A   PR+HQ P
Sbjct: 88  RVHQSPRNKLPAYTSPRVHQSP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,856,225
Number of Sequences: 59808
Number of extensions: 541683
Number of successful extensions: 1527
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)