Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00282
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 37  NTSKWLIEEQNYASTSSERTARP 105
           +T +WL+ E+    TSS  +  P
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEP 94


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 8   VTYCNRLNRETHRNG 52
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 8   VTYCNRLNRETHRNG 52
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 8   VTYCNRLNRETHRNG 52
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -1

Query: 236 LGEKHRLLIG 207
           +G+KH+LLIG
Sbjct: 183 IGQKHKLLIG 192


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 202 RTPIRSRCFSPRGTCSG*RQRRQEIPGSV 288
           RTP  +   SP    S  ++ ++EIP S+
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 608 HPIRLGRRQA 579
           HPIR GRRQ+
Sbjct: 82  HPIRHGRRQS 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,189
Number of Sequences: 438
Number of extensions: 5005
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)