Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00282
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p... 110 7e-25
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p... 101 3e-22
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 97 7e-21
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 58 5e-09
At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc... 53 1e-07
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.13
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas... 33 0.22
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm... 32 0.29
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas... 31 0.51
At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,... 29 2.0
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si... 29 2.0
At3g18770.1 68416.m02382 expressed protein 29 3.6
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 28 4.7
At3g26190.1 68416.m03268 cytochrome P450 71B21, putative (CYP71B... 28 6.2
At2g17890.1 68415.m02072 calcium-dependent protein kinase family... 28 6.2
>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 476
Score = 110 bits (265), Expect = 7e-25
Identities = 49/87 (56%), Positives = 64/87 (73%)
Frame = +2
Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKL 436
D G+RYLD F GIVTVS GHCHP + A+ +Q +L H T +Y H I ++ E LAAK+
Sbjct: 91 DESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEALAAKM 150
Query: 437 PGDLNVVYLVNSGSEANELATLLAKVH 517
PG+L VVY VNSGSEANELA ++A+++
Sbjct: 151 PGNLKVVYFVNSGSEANELAMMMARLY 177
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +3
Query: 507 RRYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPG-FYHAVHPD 653
R YTG+L++ISL+ +YHG +S+ +GLTA +++ P+P G +H V+PD
Sbjct: 175 RLYTGSLEMISLRNAYHGGSSNTIGLTALNTWK--YPLPQGEIHHVVNPD 222
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +3
Query: 108 MPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLTTTTAR 272
+PP PRPY GPS +V Q + ++ PS+ + Y+KP+ + +G MQ+L + R
Sbjct: 41 IPPFVHQPRPYKGPSADEVLQKRKKFLGPSLFHYYQKPLNIVEGKMQYLYDESGR 95
>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 481
Score = 101 bits (243), Expect = 3e-22
Identities = 46/89 (51%), Positives = 65/89 (73%)
Frame = +2
Query: 251 VNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 430
V D +G+RYLD FGGI TVS GHCHP+V ++ QL ++ H+T LY + I ++ E L +
Sbjct: 94 VFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVS 153
Query: 431 KLPGDLNVVYLVNSGSEANELATLLAKVH 517
LPGDL VV+ NSG+EANELA ++A+++
Sbjct: 154 TLPGDLKVVFFTNSGTEANELAMMMARLY 182
Score = 62.1 bits (144), Expect = 3e-10
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
Frame = +3
Query: 105 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLTTTTAR---D 275
KMPP ++ P PY GPS ++ + ++ P++ + Y P+ + + MQ++ R D
Sbjct: 45 KMPPFNYSPPPYDGPSTAEIIAKRREFLSPALFHFYNTPLNIVEAKMQYVFDENGRRYLD 104
Query: 276 TW--ICSVESSPSPWAIVIRK*MQPSKIN-SMYCGIRPTCTDIRKSMSTSNN*PLSSRGI 446
+ I +V +V Q IN S + T +D +++ ++ L
Sbjct: 105 AFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEALVSTLPGDLKV--- 161
Query: 447 *TWYI**TVDQKLMNWRLCWRRYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPP 626
++ + + + R YTG DI+SL+ SYHG ++ MG TA +++ + V
Sbjct: 162 -VFFTNSGTEANELAMMMA-RLYTGCNDIVSLRNSYHGNAAATMGATAQSNWKFNV-VQS 218
Query: 627 GFYHAVHPD 653
G +HA++PD
Sbjct: 219 GVHHAINPD 227
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 97.5 bits (232), Expect = 7e-21
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +2
Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKL 436
D G+RYLD F GI V+ GHCHP V + +Q+ L H T LY + I ++ E LA+KL
Sbjct: 93 DESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEALASKL 152
Query: 437 PGDLNVVYLVNSGSEANELATLLAKVH 517
PGDL VV+ NSG+EANELA ++AK++
Sbjct: 153 PGDLKVVFFTNSGTEANELALMMAKLY 179
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 102 AKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLTTTTAR 272
A++PP + P PYTGPS + + ++ PS+ Y+KP+ + G MQ+L + R
Sbjct: 41 ARLPPFAYTPPPYTGPSADVILSKRKEFLSPSMFCLYRKPLNIVDGKMQYLFDESGR 97
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 513 YTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYHAVHPD 653
YTG DI++++ YHG ++ MG T ++ + V +HA++PD
Sbjct: 179 YTGCQDIVAVRNGYHGNAAATMGATGQSMWKFNV-VQNSVHHALNPD 224
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/98 (31%), Positives = 53/98 (54%)
Frame = +2
Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKL 436
D +GKRY+D V+ GHCHPK+ AL++Q++ L ++ + + K + E+L
Sbjct: 72 DPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMF 131
Query: 437 PGDLNVVYLVNSGSEANELATLLAKVHRKPRHHIAADQ 550
D+ V +N+G+E E A LA+ + +I D+
Sbjct: 132 GYDM--VLPMNTGAEGVETALKLARKWGHEKKNIPKDE 167
>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
mitochondrial, putative / acetylornithine transaminase,
putative / AOTA, putative / ACOAT, putative similar to
SP|O04866 Acetylornithine aminotransferase,
mitochondrial precursor (EC 2.6.1.11) (ACOAT)
(Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
contains Pfam profile PF00202: aminotransferase, class
III
Length = 457
Score = 53.2 bits (122), Expect = 1e-07
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +2
Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKL 436
D +GK YLD GI ++GH P A+ +Q VL H +N+Y E ++L A
Sbjct: 90 DPEGKEYLDCASGIAVNALGHGDPDWLRAVTEQAGVLAHVSNVYYTIPQIELAKRLVASS 149
Query: 437 PGDLNVVYLVNSGSEANELATLLAKVHRKPRH 532
D V+ NSG+EANE A ++ ++ H
Sbjct: 150 FADR--VFFCNSGTEANEAAIKFSRKFQRFTH 179
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 534 ISLQTSYHGYTSSLMGLTATQSYRMAI-PVPPG 629
I+ S+HG T + LT+ + YR P+ PG
Sbjct: 190 IAFTNSFHGRTLGALALTSKEQYRTPFEPIMPG 222
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = +1
Query: 91 RTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRTPIRSRCFSPRGTCSG*RQRRQ 270
R++R K R R + +RD +++ KE R R R R S R RR+
Sbjct: 81 RSSRDKDRERDKVREGSRDKESDRERSSKERD--RSDRDKPRDRERREREKRSSSRSRRE 138
Query: 271 EIPGSVRWNRHRLRGPLSSESKCSPQRSTRCIVAYDQPVQTSE 399
E V R E + P+R R + AY P++ +E
Sbjct: 139 EKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLKATE 181
>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
(GSA 2) / glutamate-1-semialdehyde aminotransferase 2
(GSA-AT 2) identical to GSA2 [SP|Q42522]
Length = 472
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 251 VNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYV--EQL 424
+ D DG Y+D G +GH +V AAL + + + P + E V E +
Sbjct: 91 IRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETM----KKGTSFGAPCLLENVLAEMV 146
Query: 425 AAKLPGDLNVVYLVNSGSEA 484
+ +P + +V VNSG+EA
Sbjct: 147 ISAVP-SIEMVRFVNSGTEA 165
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 507 RRYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYHAVHPD 653
R +TG I + YHG+ +S + + + +P PG A D
Sbjct: 174 RAFTGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSD 222
>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
gamma-amino-N-butyrate transaminase / GABA transaminase
/ beta-alanine--oxoglutarate aminotransferase identical
to gamma-aminobutyrate transaminase subunit precursor
[Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
contains Pfam profile PF00202: aminotransferase, class
III; identical to cDNA gamma-aminobutyrate transaminase
subunit precursor, nuclear gene for mitochondrial
product GI:14030434
Length = 504
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 251 VNDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVL--WHT-TNLYRHPKIYEYVEQ 421
V D+ GK+YLD G+ ++G P++ +A +QL+ L +H+ N P +
Sbjct: 81 VYDDTGKKYLDSLAGLWCTALGGNEPRLVSAAVEQLNTLPFYHSFWNRTTKPSLDLAKVL 140
Query: 422 LAAKLPGDLNVVYLVNSGSEANE 490
L + + + GS+AN+
Sbjct: 141 LEMFTANKMAKAFFTSGGSDAND 163
>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
(GSA 1) / glutamate-1-semialdehyde aminotransferase 1
(GSA-AT 1) identical to GSA 1 [SP|P42799]
Length = 474
Score = 31.5 bits (68), Expect = 0.51
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 DNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYV--EQLAA 430
D DG Y+D G +GH +V AAL + + + P + E V E + +
Sbjct: 95 DIDGNEYIDYVGSWGPAIIGHADDEVLAALAETM----KKGTSFGAPCLLENVLAEMVIS 150
Query: 431 KLPGDLNVVYLVNSGSEA 484
+P + +V VNSG+EA
Sbjct: 151 AVP-SIEMVRFVNSGTEA 167
>At3g02630.1 68416.m00254 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 396
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 114 PTDFVPRPYTGPSYQQVEQMKG--VYMPPSITNAYKKPVLLTQGHMQWLTTTTARDTWIC 287
PTDF+P P + Y QV++++ +P ++ + + T D
Sbjct: 96 PTDFLPEPESEGFYDQVKELRERCKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRD 155
Query: 288 SVESSPSPWAIVIR 329
+SP+PWAI R
Sbjct: 156 ETGASPTPWAIWTR 169
>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
similar to SP|P47047 ATP-dependent RNA helicase DOB1
{Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
thaliana] GI:16024936; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 988
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 416 EQLAAKLPGDLNVVYLVNSGSEANELATLLAKVHRKPRHHIAADQLP 556
E+ P + V+L + A E A +AKVH++P H + D P
Sbjct: 195 EESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRP 241
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 524 VSCVPSPAKSPVH*LLIH-CSLNIP 453
VSC PSP +S H L+ H CS ++P
Sbjct: 324 VSCSPSPTRSDSHALVSHPCSRHLP 348
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +3
Query: 93 YSTAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLL 230
Y+ +PP + P Y P+ VY P Y KP LL
Sbjct: 75 YTKPTLPPPAYTPPVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTLL 120
>At3g26190.1 68416.m03268 cytochrome P450 71B21, putative (CYP71B21)
identical to Cytochrome P450 71B21 (SP:Q9LTM2)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 499
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 356 LDVLWHTTNLYRHPKIYEYVEQLAAKLPGD 445
+ ++W T L RHP++ + ++Q +L GD
Sbjct: 308 ITMIWALTELTRHPRVMKKLQQEIRELLGD 337
>At2g17890.1 68415.m02072 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 571
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 476 SEANELATLLAKVHR-KPRHHIAADQLPRLHQQPHGLDGDPVV 601
S + +A + K HR +PR + A + P H PHG + V+
Sbjct: 37 SPCSFMAVTIQKDHRTQPRRNATAKKTPTRHTPPHGKVREKVI 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,006
Number of Sequences: 28952
Number of extensions: 350581
Number of successful extensions: 1033
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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