Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00281
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   2.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   3.9  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   9.0  

>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 26  KIKKLNYDAS-LTKLHANWKIYYIK 97
           KI  +N  A+ L KLH NWK+  IK
Sbjct: 428 KISSINSGATMLLKLHYNWKLLDIK 452


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 189 TMLTCSVPVILKP 151
           T+LTCSVP++L P
Sbjct: 446 TVLTCSVPIVLGP 458


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/34 (23%), Positives = 23/34 (67%)
 Frame = +2

Query: 113 RQI*EQCNRKTSHGFKITGTEHVSIVLFLFNYFS 214
           +++ ++C   T+ GF++  TE + + + L+N+++
Sbjct: 286 KEVLKKCKFVTTMGFRMMLTEPIILSMGLYNFYA 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,053
Number of Sequences: 5004
Number of extensions: 37289
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)