Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00280
         (730 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4CH87 Cluster: Acyltransferase family protein; n=4; Ba...    34   4.1  
UniRef50_Q9F3S7 Cluster: Cytochrome oxidase subunit III; n=3; Ba...    33   7.2  
UniRef50_O31428 Cluster: YbdB protein; n=1; Bacillus subtilis|Re...    33   9.5  

>UniRef50_A4CH87 Cluster: Acyltransferase family protein; n=4;
           Bacteroidetes|Rep: Acyltransferase family protein -
           Robiginitalea biformata HTCC2501
          Length = 349

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 431 VGSVGIKAFFMIEVLLVALRPFQFHQDRW 345
           VG + + +FF+IE LLV  RPF+ + + W
Sbjct: 149 VGPLSVISFFVIEALLVRPRPFELYAETW 177


>UniRef50_Q9F3S7 Cluster: Cytochrome oxidase subunit III; n=3;
           Bacteria|Rep: Cytochrome oxidase subunit III -
           Rhodothermus marinus (Rhodothermus obamensis)
          Length = 226

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 483 KGRRGVFQDEYYCPFSSSRLGWH 415
           K +RGVF  EYY P   S L WH
Sbjct: 187 KAQRGVFSSEYYTPVEISALYWH 209


>UniRef50_O31428 Cluster: YbdB protein; n=1; Bacillus subtilis|Rep:
           YbdB protein - Bacillus subtilis
          Length = 448

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 614 VLQWKFYLSRTPARNITK*GILYRIKYHYPEYLYRQFVSIVSATRVEEVYS 462
           +L +K YL       +   G+ Y + + YPE+ Y  F  IVSA  +   YS
Sbjct: 265 LLLFKKYLFFHSIHTVMLSGVFYVVIFMYPEWFYLLFFLIVSAVMLSSYYS 315


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,451,586
Number of Sequences: 1657284
Number of extensions: 12815872
Number of successful extensions: 28057
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28055
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)