Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00280
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   8.4  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    25   8.4  

>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 613 YFS--GSFIYPELQRVTLLSRVFCIGSSTTIL 524
           YFS  GSF   E+ R+T   R+   G++TT++
Sbjct: 69  YFSHVGSFSLAEIYRITWDKRIVLYGTTTTLV 100


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 135 STPYKLFCSTCSLTHASARRVSGRIFSAGRDSDPVVDSFA 254
           +T  K F     L H+SA+   G ++  G+   PVV  ++
Sbjct: 423 ATALKSFAKAAFLGHSSAQLRMGAVYEFGKYGCPVVPRYS 462


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 647 CSFYVLIEL*FVLQWKFYLSRTPARNIT 564
           C F+V   L  V  W F LSR  A  +T
Sbjct: 44  CHFFVFFLLTLVFYWVFDLSRRRATQLT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,613
Number of Sequences: 5004
Number of extensions: 53360
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)