Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00280
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106576-6|AAC78178.1|  381|Caenorhabditis elegans Hypothetical ...    31   0.84 
AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    28   7.9  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    28   7.9  

>AF106576-6|AAC78178.1|  381|Caenorhabditis elegans Hypothetical
           protein W07E6.3 protein.
          Length = 381

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 533 HYPEYLYRQFVSIVSATRVEEVYSKMSTTAHSPVVGSVGIKAFFMIEVLLVALRPFQFHQ 354
           H+PE   R  + I       E   K ++   SP+ G++ I  + M+ +L+ AL     HQ
Sbjct: 119 HFPEVKER--LKIFGILGKFEKSEKKTSEFSSPIRGAIRIAEYIMMILLISALLVMFTHQ 176

Query: 353 DRW 345
            RW
Sbjct: 177 HRW 179


>AC084159-7|AAK39370.2|  277|Caenorhabditis elegans Hypothetical
           protein Y73B3A.16 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 435 WRMG---SSTHLGIHLFYPCSRNDTNKLAI*IFRIVVLDPIQNT 557
           W  G   S  + G  LFY  S++DT +L   + +++V  P+ NT
Sbjct: 167 WSFGCILSELYTGDLLFYGNSKSDTEELQFELMQMIVQQPLSNT 210


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 344 PTCPGETGKASRPPVILQS*KRPLCQP 424
           P  PG  G   RPP++ +    P C P
Sbjct: 113 PGAPGRPGTPGRPPIVCEEQDVPPCNP 139


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 533 HYPEYLYRQFVSIVSATRVEEVYSKMSTTA 444
           HYPEY Y  +++    ++ ++VY   ST A
Sbjct: 164 HYPEYDYTPYLNFGGFSQAQKVYLDNSTVA 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,113,307
Number of Sequences: 27780
Number of extensions: 294861
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)