Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00280
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07540.1 68416.m00900 formin homology 2 domain-containing pro...    28   5.5  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    27   9.6  

>At3g07540.1 68416.m00900 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 841

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 220 PAEKIRPETRRADAWVRLQVEQNN 149
           P +K+RP +RR + W RL    +N
Sbjct: 483 PWDKVRPSSRRTNTWDRLPYNSSN 506


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 373 GLSSFTRTGGRAKAQLEGVGFASSCSNASKGDLTTQEQLLAKESTTGSESRPAEKI 206
           G ++F     R   Q    GF  S     +G LTT+  L+  + T+G+ES+P   +
Sbjct: 345 GCNTFKYKLVRQPGQPPAFGFWKSVQKWKEG-LTTRPGLILPDLTSGAESKPVSLV 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,832
Number of Sequences: 28952
Number of extensions: 281003
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)