Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00279
(731 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 23 3.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.9
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 5.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 22 5.2
DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid p... 22 6.8
AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatas... 22 6.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.0
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 9.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.0
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 23.0 bits (47), Expect = 3.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 390 NSHLMTSQINRTMIVCNYLS 331
N+ ++ ++ N TM+ CN LS
Sbjct: 333 NTFILVAENNTTMVFCNDLS 352
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 433 ILHLTIFISLVAEIKFTSYD 374
+L LT+F++LVAE T+ D
Sbjct: 233 LLSLTVFLNLVAESMPTTSD 252
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 433 ILHLTIFISLVAEIKFTSYD 374
+L LT+F++LVAE T+ D
Sbjct: 233 LLSLTVFLNLVAESMPTTSD 252
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 433 ILHLTIFISLVAEIKFTSYD 374
+L LT+F++LVAE T+ D
Sbjct: 233 LLSLTVFLNLVAESMPTTSD 252
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 433 ILHLTIFISLVAEIKFTSYD 374
+L LT+F++LVAE T+ D
Sbjct: 301 LLSLTVFLNLVAESMPTTSD 320
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 529 NGHCNNNILLEQLNFNVINLFKV 597
N + NNN ++L +N+IN+ ++
Sbjct: 100 NNNYNNNNYNKKLYYNIINIEQI 122
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 529 NGHCNNNILLEQLNFNVINLFKV 597
N + NNN ++L +N+IN+ ++
Sbjct: 100 NNNYNNNNYNKKLYYNIINIEQI 122
>DQ058012-1|AAY57281.1| 373|Apis mellifera venom allergen acid
phosphatase protein.
Length = 373
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 544 NNILLEQLNFNVINLFKV 597
NN+ +E+L+F +NL ++
Sbjct: 350 NNLSIEELDFVKLNLIRI 367
>AY939855-1|AAX33235.1| 388|Apis mellifera venom acid phosphatase
precursor protein.
Length = 388
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 544 NNILLEQLNFNVINLFKV 597
NN+ +E+L+F +NL ++
Sbjct: 365 NNLSIEELDFVKLNLIRI 382
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 433 ILHLTIFISLVAE 395
+L LT+F++LVAE
Sbjct: 233 LLSLTVFLNLVAE 245
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 433 ILHLTIFISLVAE 395
+L LT+F++LVAE
Sbjct: 233 LLSLTVFLNLVAE 245
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 433 ILHLTIFISLVAE 395
+L LT+F++LVAE
Sbjct: 233 LLSLTVFLNLVAE 245
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.4 bits (43), Expect = 9.0
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 42 KEKKKLNYPLLTIFTRK 92
KE+ N+P++++F+R+
Sbjct: 95 KEEALWNFPMISVFSRQ 111
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 433 ILHLTIFISLVAE 395
+L LT+F++LVAE
Sbjct: 301 LLSLTVFLNLVAE 313
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,430
Number of Sequences: 438
Number of extensions: 4015
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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