Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00279
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At3g57610.1 68416.m06418 adenylosuccinate synthetase (ADSS) iden...    28   7.3  

>At5g61800.1 68418.m07755 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 499

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -1

Query: 680 FLYRSVCDKKANDVTVIKT------HFAVFGNVFTLNKLI 579
           F++++   KK  D+T++KT       F +  ++FTLN LI
Sbjct: 120 FVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLI 159


>At3g57610.1 68416.m06418 adenylosuccinate synthetase (ADSS)
           identical to adenylosuccinate synthetase, chloroplast
           precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS)
           (AMPSase) (Swiss-Prot:Q96529) [Arabidopsis thaliana]
          Length = 490

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 306 LNSLRIDNNEQFVL*FPYAVKYPP 235
           L+SL +D+N +F +  PY  +YPP
Sbjct: 3   LSSLTLDSNPRFAVGGPYHRRYPP 26


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,177
Number of Sequences: 28952
Number of extensions: 256382
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)