Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00278
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q87ID9 Cluster: Putative uncharacterized protein VPA066...    33   7.5  
UniRef50_Q0N424 Cluster: Cg30/ac88-like protein; n=1; Clanis bil...    33   9.9  

>UniRef50_Q87ID9 Cluster: Putative uncharacterized protein VPA0667;
           n=3; Vibrio|Rep: Putative uncharacterized protein
           VPA0667 - Vibrio parahaemolyticus
          Length = 97

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 582 LCIVCAVILKNK--SCQVTNLIAKLMLLINFFNPFHCRKYVIVWFLSA*YLFRLT 740
           L ++CAV L+ K  S  V   +A  M+L  FF P +  +Y+IV F S+  L +L+
Sbjct: 18  LVVLCAVALRTKPNSWCVGLHMALHMMLALFFQPIYLVQYLIVTFFSSPLLIKLS 72


>UniRef50_Q0N424 Cluster: Cg30/ac88-like protein; n=1; Clanis
           bilineata nucleopolyhedrosis virus|Rep: Cg30/ac88-like
           protein - Clanis bilineata nucleopolyhedrosis virus
          Length = 346

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 561 IVKCTHKLCIVCAVILKNK---SCQVTNLIAKLMLLIN 665
           +V C H +C+VCAV LK +   SC +    +  ++L N
Sbjct: 73  LVSCLHSICVVCAVSLKQRQVISCPLCRTQSNKLVLFN 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,481,186
Number of Sequences: 1657284
Number of extensions: 8503682
Number of successful extensions: 12095
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12094
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)