Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00278
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)                   30   1.7  

>SB_46676| Best HMM Match : UPF0259 (HMM E-Value=5.2)
          Length = 597

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ MS +  K  +  FH ++CH YEKT
Sbjct: 342 RRHHYVSLLLMSSI-RKDVIIMFHYYWCHQYEKT 374



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ +S +  K  +  FH ++CH YEKT
Sbjct: 170 RRHHYVSLLLVSSI-RKDVIIMFHYYWCHQYEKT 202



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ +S +  K  +  FH ++CH YEKT
Sbjct: 217 RRHHYVSLLLVSSI-RKDVIIMFHYYWCHQYEKT 249



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ +S +  K  +  FH ++CH YEKT
Sbjct: 437 RRHHYVSLLLVSSI-RKDVIIMFHYYWCHQYEKT 469



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ +S +  K  +  FH ++CH YEKT
Sbjct: 484 RRHHYVSLLLVSSI-RKDVIIMFHYYWCHQYEKT 516



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 280 RIHFNVSII*MSCL*LKCELSAFH*FYCHSYEKT 179
           R H  VS++ +S +  K  +  FH ++CH YEKT
Sbjct: 531 RRHHYVSLLLVSSI-RKDVIIMFHYYWCHQYEKT 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,984
Number of Sequences: 59808
Number of extensions: 271891
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)