Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00277
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   2.6  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.0  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   6.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.0  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   8.0  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.0  

>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 336 SMRIISRSGDQVSSAEIGENLVLQVDV 416
           S  I++  GD+V++ EIG+ +V+  D+
Sbjct: 99  SCGIVAEKGDEVNNLEIGDRVVIAFDL 125


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 46  SYSKDERCRKVVEMPKDEESFVFFTVHF 129
           SYSK +  R V ++P++ + FVF  + +
Sbjct: 304 SYSKTKLGRAVAKLPQNLQPFVFMIIQY 331


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 34  LYVKSYSKDERCRKVVEMPKDEESFVFFTVHFGD----CGLVHVNG 159
           +Y  +YS     +KV+++P D++ FV       D     G+ H+ G
Sbjct: 83  IYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHIGG 128


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 291 TTAGTIANTGPPPTCSMRIISRSGDQVSSAEIGENLVLQVDVQPSSIY 434
           TTAGT+    P PT S         Q ++       V+  D+ PS ++
Sbjct: 784 TTAGTVLIDVPTPTASSSPFPSCNTQCTNENSFRIQVINDDIYPSYVH 831


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 682 ATVNRYAFSKADANVALESYIVTTGELESIES 587
           +TV  YAFS+AD N   +  +VTT +    ES
Sbjct: 92  STVIIYAFSQADENEPPQFVLVTTHKFSINES 123


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 129 EMYSEENKTFFVFRHLYNFPASLILTVTFYVQKAVEIF 16
           +MYS     F++   ++ FPASL+L   F + K + +F
Sbjct: 100 QMYSWSGTAFYLGYLVFEFPASLLLQ-RFPLSKTLCVF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,032
Number of Sequences: 5004
Number of extensions: 55995
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)