Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00277
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457...    34   0.13 
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259...    34   0.13 
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922     28   6.3  

>11_06_0366 +
           22744584-22744835,22745248-22745335,22745657-22745702,
           22746159-22746345,22746436-22746507,22746597-22746728
          Length = 258

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 554 ERSEDGSALRAAFNAFKFPSSDN---IRFQCNIRVCFGKC 664
           E  E   AL AA   FK PSS+N   I   CN R C G C
Sbjct: 134 ESKERSEALSAAAKKFKLPSSENLGEIAEHCNERKCAGHC 173


>11_06_0363 +
           22724802-22725053,22725466-22725553,22725875-22725920,
           22726377-22726563,22726654-22726725,22726815-22726946
          Length = 258

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 554 ERSEDGSALRAAFNAFKFPSSDN---IRFQCNIRVCFGKC 664
           E  E   AL AA   FK PSS+N   I   CN R C G C
Sbjct: 134 ESKERSEALSAAAKKFKLPSSENLGEIAEHCNERKCAGHC 173


>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
          Length = 618

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 264 TLAFNVSM--LTTAGTIANTGPPPTCSMRIISRSGDQVSSAEIGENLVLQVDVQPSSIYG 437
           ++A+ + M  LT +  + +  PPP C    ++ +G+    A   + LVL + +  +S+  
Sbjct: 95  SVAYQLGMVGLTVSALVPSLRPPP-CRGEAVAVAGEACQRATPWQLLVLYLSLLCTSVGT 153

Query: 438 GFARSCV 458
           G  R CV
Sbjct: 154 GGTRPCV 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,266
Number of Sequences: 37544
Number of extensions: 372888
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)