Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00277
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)                    31   0.91 
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)                   29   4.9  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 28   6.4  
SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                28   8.5  

>SB_49370| Best HMM Match : rve (HMM E-Value=0.0062)
          Length = 192

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 391 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 263
           +P++ +     EREI+ ++ + GGPV  + PAV   + LNAR+
Sbjct: 91  NPVAEKAVQELEREILQLDPL-GGPVSEVAPAVATAN-LNARI 131


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 430 ILDGWTSTCKTRFSPISAELTWSPEREIILMEQVGGGP 317
           +L   ++TCK  F    A +TW    E+  M  VGG P
Sbjct: 187 VLXNSSTTCKYHFQTEQAPVTWKTVMEMRRMMAVGGRP 224


>SB_48713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 224 STSNAYTKLVTKRNSCIQCVHVNNSRHNRQYRPS--AYLLHENNFTFWRPSQFRRNRREP 397
           +T+   TK + +   C++ + V+   H   + PS  AY + +  F  W   +  RNR + 
Sbjct: 596 TTATQRTKCIPEDKICLRLILVSGKTHEFVFSPSDTAYYITQQVFEHW--PEGLRNREKT 653

Query: 398 RFTS*CPTI 424
              S C TI
Sbjct: 654 DERSCCCTI 662


>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
          Length = 544

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 391 SPISAELTWSPEREIILMEQVGGGPVLAIVPAVVNMDTLNARV 263
           +P++ +     EREI+ ++ + GGPV  +  AVV  + LNAR+
Sbjct: 397 NPVAEKAVQELEREILQLDPL-GGPVSEVALAVVTAN-LNARI 437


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 127 FGDCGLVHVNGLASFVLVMQTHLKLVTSTTKAFHIKCIYK 246
           F D   +   G     L   +H+  VT TTK  H  C YK
Sbjct: 87  FEDLSSISTYGFRGEALASISHVAHVTITTKTAHSSCAYK 126


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 61   ERCRKVVEMPKDEESFVFFTVHF-GDCGLVHVNGLASFVLVMQTHLK 198
            +RC+K +    +E+  +F   +F GD  L+ + G A+   V+Q+HLK
Sbjct: 1417 QRCQKSLNEFLEEKRSLFPRFYFIGDDDLLEILGQATNPTVIQSHLK 1463


>SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 109 VFFTVHFGDCGLVHVNGLASF 171
           V+  VHF  CG++ VNG A F
Sbjct: 354 VYGNVHFSTCGMMPVNGNAHF 374


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 162 SKLRSSNANSSETGNINHKSIPHQMHIQNW*QNVTLAFNVSMLTTAGTIANTGPPPTCSM 341
           S   +SN N+S   NIN+ +  +  +  N   N T A   +  TTA T   T P     M
Sbjct: 40  SNCNNSNCNNSNCNNINNCNNSNNCNNNNNCNNTTAA-TTATTTTAATTPTTLPQQLSQM 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,512,359
Number of Sequences: 59808
Number of extensions: 440888
Number of successful extensions: 1679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)