Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00277
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52750.1 68414.m05963 hydrolase, alpha/beta fold family prote...    29   4.0  
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to...    27   9.2  
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT...    27   9.2  

>At1g52750.1 68414.m05963 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 633

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 475 TSLVFATQLRAKPP*ILDGWTSTCKTRFSPISAELTWSPEREIILMEQVGGGPVLAIVPA 296
           T L     +  K P  L+ W        S +S E+  SP+    L++ +G  PVL +  A
Sbjct: 517 TKLTTDITMLYKAPLCLEAWDEALN-EISKLSYEMILSPQNASALVKSIGDLPVLVVAGA 575


>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
           glutamine synthetase, chloroplast precursor (glutamate--
           ammonia ligase, GS2) [Arabidopsis thaliana]
           SWISS-PROT:Q43127
          Length = 430

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 327 PTCSMRIISRSGDQVSSAEIGENLVLQVDVQPSSIYGGFARSCVAKTSEVSTNVE 491
           PTC MR+   S    SS+++  ++VL+   Q ++   GF    +   +     VE
Sbjct: 9   PTCQMRVPKHSSVIASSSKLWSSVVLKQKKQSNNKVRGFRVLALQSDNSTVNRVE 63


>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
           identical to potassium channel [Arabidopsis thaliana]
           gi|1100898|gb|AAA97865; Note: also identical to AKT3
           [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
           a truncated version of AKT2, PMID:10852932; member of
           the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
           channel family, PMID:11500563; identical to cDNA
           inward-rectifying K+ channel (AKT3) GI:1172219
          Length = 802

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 625 YIVTTGELESIESGTQRAAVLASFPFTENSGXXXXXXXXXTRYSFST 485
           YI+ +GE+E I+S  +R +VL +    +  G           Y+F T
Sbjct: 432 YIIVSGEVEIIDSEMERESVLGTLRCGDIFGEVGALCCRPQSYTFQT 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,004
Number of Sequences: 28952
Number of extensions: 296708
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)