Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00276
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 135 4e-33
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 132 2e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 85 7e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 1e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 60 1e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 60 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 3e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 7e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 2e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 2e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 1e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 48 6e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 6e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 6e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 43 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 3e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 42 4e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 4e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 39 4e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 6e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.014
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.17
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 0.39
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.91
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.2
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.6
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 2.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 3.7
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.7
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.4
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 25 8.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 135 bits (326), Expect = 4e-33
Identities = 62/79 (78%), Positives = 74/79 (93%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 445 KCHACIGGTNVREDIRQLE 501
+CHACIGGT VR+D+ L+
Sbjct: 117 ECHACIGGTLVRDDMAALQ 135
Score = 81.8 bits (193), Expect = 5e-17
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +2
Query: 110 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 132 bits (320), Expect = 2e-32
Identities = 65/92 (70%), Positives = 77/92 (83%), Gaps = 3/92 (3%)
Frame = +1
Query: 235 ATRNNAFIQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 405
A ++ A IQ GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI
Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
Q VV+ALGDH+N +CHACIGGT+V DI++L+
Sbjct: 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLD 137
Score = 58.4 bits (135), Expect = 6e-10
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +2
Query: 110 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 84.6 bits (200), Expect = 7e-18
Identities = 40/81 (49%), Positives = 55/81 (67%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+N K GGT +R+DI +L
Sbjct: 139 MNVKVMVTTGGTTLRDDIIRL 159
Score = 42.3 bits (95), Expect = 4e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 62 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 229
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 230 IQQRAI 247
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 1e-12
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 445 K 447
K
Sbjct: 214 K 214
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 60.5 bits (140), Expect = 1e-10
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101
Query: 436 LNAKCHACIGGTN-VREDI 489
LN K +GG + +R+ I
Sbjct: 102 LNLKHALIVGGMDMIRQSI 120
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +
Sbjct: 86 ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145
Query: 436 L-NAKCHACIGGTNVREDI 489
L + + GG N+++D+
Sbjct: 146 LPDVRTAVFYGGINIKQDM 164
Score = 33.1 bits (72), Expect = 0.024
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256
F D LK ELLR I GFE PS +QQ I S
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQS 85
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 3e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 445 KCHACIGGTNV 477
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 31.5 bits (68), Expect = 0.074
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 14 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 193
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 194 GIYAYGFEKPSAIQQRAI 247
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 7e-10
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 429
++GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 430 DHLNAKCHACIGGTNVREDIRQL 498
+ + A +GG ++ E L
Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLL 186
Score = 31.5 bits (68), Expect = 0.074
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 2e-09
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 417
++G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Query: 418 IALGDHLNAKCHACIGGTNV 477
+ L A C I NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124
Score = 32.7 bits (71), Expect = 0.032
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 423
++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133
Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498
+G + IGG N +E+ +L
Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERL 158
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 2e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 432
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 433 HLNAKCHACIGGTNVREDIRQL 498
+ CIGG +++ ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377
Score = 31.9 bits (69), Expect = 0.056
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 1e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 435
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 436 LNAKCHACIGGTNVREDIRQL 498
N + + GG V++ R L
Sbjct: 219 PNIRVMSITGGLAVQKQQRLL 239
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.4 bits (110), Expect = 6e-07
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQK 411
+Q +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQL 498
+ L +C + +GG E Q+
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQM 372
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 45.2 bits (102), Expect = 6e-06
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414
A GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLE 501
LN + GG +++ I L+
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLK 539
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPSSKDAM-LSLKPSQELEK 304
D + V ++ L + + I + G+EKP++IQ +AI + S +D + ++ S +
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 305 LLLSLYR 325
LL ++R
Sbjct: 472 FLLPMFR 478
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 45.2 bits (102), Expect = 6e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 426
+ GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query: 427 GDHLNAKCHACIGGTNVREDIR 492
N K GG E R
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR 281
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 42.7 bits (96), Expect = 3e-05
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
+ GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V
Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183
Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498
L + + IGG N R + +L
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKL 208
Score = 32.7 bits (71), Expect = 0.032
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
+E F D+ L E + + I GFE + IQ+R+I P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 414
F++ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 35 FLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 411
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.3 bits (95), Expect = 4e-05
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Frame = +1
Query: 226 CNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 384
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 385 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVRED 486
REL QQI V L + H C+ IGG + +
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSE 262
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 4e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 438
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 439 NAKCHACIGGTNVREDIRQL 498
+ A G ++R + QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
+ GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQL 498
G + GG IR L
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDL 242
Score = 28.3 bits (60), Expect = 0.69
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 244
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.3 bits (85), Expect = 6e-04
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Frame = +1
Query: 232 PATRNNAFI--QGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQ 363
P +N+ I GRD++A AQ+G+GKTA F IL Q R +
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253
Query: 364 A----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
A LILAPTREL QI + + A GG ++R IRQ++
Sbjct: 254 AYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQID 303
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 408
N F + + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129
Query: 409 KVVIALGDHLNAKCHACIGG-TNVRED 486
+ L + IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.9 bits (74), Expect = 0.014
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 217 KTFCNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 396
KT+ + A N G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 397 QQIQKVVI 420
Q +K +I
Sbjct: 370 QDQKKSLI 377
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 328 LQQIDTSIRECQALILAPTRELAQQIQK 411
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 30.3 bits (65), Expect = 0.17
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 125 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSKD 265
LDT+W V + NL+ + + I + F PS I + MPS D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.1 bits (62), Expect = 0.39
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPSSKDAMLSLKPSQELE 301
DTDWD +V + D++L+ RGI A G + + Q+ A + SSK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 302 KLLLSLYRFYNKS 340
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.91
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 214
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 292 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 408
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 324 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 425
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 99 DLREWTLGHLTPT 137
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 438 QVITKSYHHLLNLLGQLSCGSQDQ 367
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 403 IQKVVIALGDHLNAKCHACIGGTNVRED 486
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 498 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 397
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 119 QGPFPEVHRNYLDPSMAHFWNPLANL 42
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI----MPSSKDAMLSLKPSQELE 301
ET D ++ K GI +KP + QRAI S+K KP Q+L+
Sbjct: 2255 ETIDGLHRKRLNEEGITLEERQKPEILNQRAITVLNRVSNKLTGRDFKPQQQLD 2308
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 249 CLHPRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 347
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,702
Number of Sequences: 5004
Number of extensions: 48133
Number of successful extensions: 184
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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