Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00276
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       47   1e-07
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQ 408
           + GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI 
Sbjct: 231 MNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290

Query: 409 KVVIALGDHLNAKCHACIGGTNV 477
           + ++    +   K     GGT+V
Sbjct: 291 QQIVKFSLNSILKTVVAYGGTSV 313



 Score = 28.3 bits (60), Expect = 0.048
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--IMPSSKDAM 271
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A  I+ + +D M
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 287 SQELEKLLLSLYRFYNKSIQAFVNV 361
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 478 GHWCHQCKHGI*HSS 434
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 221 PSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNKSI 343
           PS        P S+  + +L+P    ++     YR YN ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 456 LHWWHQCP 479
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +1

Query: 172 PQRRIVERHIRLWF*KTFC----NPATRNNA 252
           P +++    I  WF  TFC    N AT  NA
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNA 551


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 271 HRVLG*RHYCALLDCRRFFKTIGVYASQ 188
           H + G +H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 271 HRVLG*RHYCALLDCRRFFKTIGVYASQ 188
           H + G +H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 188  LRGIYAYGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEK 304
            L  +YA   +K SA   + I+  S       +P Q+ ++
Sbjct: 1473 LHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQ 1511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,431
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)