Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00276
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 121 3e-28
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 119 1e-27
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 118 3e-27
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 113 8e-26
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 101 3e-22
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 79 1e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 79 1e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 71 4e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 64 5e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 63 1e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 63 1e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 60 8e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 2e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 56 1e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 1e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 2e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 55 3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 54 7e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 53 9e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 53 9e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 53 9e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 53 9e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 53 1e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 51 4e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 7e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 50 7e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 50 9e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 49 2e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 2e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 48 4e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 47 6e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 47 6e-06
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 46 1e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 46 1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 1e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 1e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 46 1e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 2e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 45 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 1e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 43 1e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 43 1e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 43 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 42 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 42 3e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 41 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 41 5e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 5e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 5e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 39 0.002
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.004
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 36 0.012
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 36 0.015
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.020
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.035
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 33 0.11
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 32 0.19
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 0.76
At3g10020.1 68416.m01202 expressed protein 29 1.3
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 1.3
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 4.1
At1g76010.1 68414.m08825 expressed protein 28 4.1
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 4.1
At1g17270.1 68414.m02103 expressed protein 28 4.1
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 5.4
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 27 7.1
At5g03220.1 68418.m00270 transcriptional co-activator-related co... 27 7.1
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.4
At4g30790.1 68417.m04362 expressed protein 27 9.4
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 27 9.4
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 9.4
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 121 bits (291), Expect = 3e-28
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 73 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGD 132
Query: 433 HLNAKCHACIGGTNVREDIRQLE 501
+L K HAC+GGT+VRED R L+
Sbjct: 133 YLGVKVHACVGGTSVREDQRILQ 155
Score = 66.9 bits (156), Expect = 7e-12
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 119 bits (286), Expect = 1e-27
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 75 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGD 134
Query: 433 HLNAKCHACIGGTNVREDIRQLE 501
+L K AC+GGT+VRED R L+
Sbjct: 135 YLGVKAQACVGGTSVREDQRVLQ 157
Score = 66.9 bits (156), Expect = 7e-12
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +2
Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 118 bits (283), Expect = 3e-27
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 432
F +G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD
Sbjct: 73 FCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGD 132
Query: 433 HLNAKCHACIGGTNVREDIRQLE 501
+ K HAC+GGT+VRED R L+
Sbjct: 133 YQGVKVHACVGGTSVREDQRILQ 155
Score = 67.7 bits (158), Expect = 4e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 113 bits (271), Expect = 8e-26
Identities = 53/82 (64%), Positives = 66/82 (80%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H
Sbjct: 70 LQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLH 129
Query: 436 LNAKCHACIGGTNVREDIRQLE 501
N + HACIGG +V EDIR+LE
Sbjct: 130 ANIQAHACIGGNSVGEDIRKLE 151
Score = 63.7 bits (148), Expect = 7e-11
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +2
Query: 131 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMP 68
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 101 bits (242), Expect = 3e-22
Identities = 45/82 (54%), Positives = 64/82 (78%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H
Sbjct: 57 LKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH 116
Query: 436 LNAKCHACIGGTNVREDIRQLE 501
N + HACIGG ++ EDI++LE
Sbjct: 117 TNIQAHACIGGKSIGEDIKKLE 138
Score = 53.6 bits (123), Expect = 7e-08
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
+++FDDM + +++LRG+Y YG++KPS IQQRA++P K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 436 LNAKCHACIGGTNVREDIRQL 498
L + GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 436 LNAKCHACIGGTNVREDIRQL 498
L + GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246
Score = 40.3 bits (90), Expect = 7e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/81 (44%), Positives = 54/81 (66%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 436 LNAKCHACIGGTNVREDIRQL 498
LN + GGT++R+DI +L
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/81 (44%), Positives = 54/81 (66%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 436 LNAKCHACIGGTNVREDIRQL 498
LN + GGT++R+DI +L
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 70.9 bits (166), Expect = 4e-13
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 436 LNAKCHACIGGTNVREDIRQL 498
L + GGT++R+DI +L
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRL 269
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.1 bits (149), Expect = 5e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG
Sbjct: 93 LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152
Query: 436 LNAKCHACIGGTNV 477
LN +C +GG ++
Sbjct: 153 LNLRCSVIVGGMDM 166
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 436 L-NAKCHACIGGTNVR 480
L + K GG N++
Sbjct: 141 LPDTKVSVFYGGVNIK 156
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 436 L-NAKCHACIGGTNVR 480
L + K GG N++
Sbjct: 141 LPDTKVSVFYGGVNIK 156
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.1 bits (139), Expect = 8e-10
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 444
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 445 KCHACIGGTNVR 480
K GG N++
Sbjct: 62 KVSVFYGGVNIK 73
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 59.3 bits (137), Expect = 1e-09
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 426
+ GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 427 GDHLNAKCHACIGGTNVRE 483
+ KC +GG +VRE
Sbjct: 262 AQFTDIKCGLIVGGLSVRE 280
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 429
+ G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG
Sbjct: 63 LSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELG 122
Query: 430 DHLNAKCHACIGGTNVREDIRQL 498
+ + +GG ++ + +L
Sbjct: 123 KFTDLRVSLLVGGDSMEDQFEEL 145
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 56.4 bits (130), Expect = 1e-08
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 417
++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQLE 501
L+ C GGT + + +RQL+
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLD 224
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.0 bits (129), Expect = 1e-08
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 417
++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 151 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210
Query: 418 IALGDHLNAKCHACIGGTNVREDIRQL 498
L+ C GGT + + +R+L
Sbjct: 211 RESAPSLDTIC--LYGGTPIGQQMREL 235
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 2e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 429
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 33.9 bits (74), Expect = 0.062
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYA-YGFEKPSAIQ 235
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.8 bits (126), Expect = 3e-08
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 10/75 (13%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQI 405
+QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Query: 406 QKVVIALGDHLNAKC 450
+K + +L+ C
Sbjct: 197 EKEIKESAPYLSTVC 211
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 53.6 bits (123), Expect = 7e-08
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 411
+Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 412 VVIALGDHLNAKCHACIGGTNVRE 483
+ +L + + +GG ++ E
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEE 431
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.2 bits (122), Expect = 9e-08
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 399
++G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA
Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
Query: 400 QIQKVVIALGDHLNAKCHACIGG 468
QI + ALG ++ +C +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 140 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 53.2 bits (122), Expect = 9e-08
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLE 501
G C GG +R LE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLE 278
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 53.2 bits (122), Expect = 9e-08
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLE 501
G C GG +R LE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLE 278
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 53.2 bits (122), Expect = 9e-08
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLE 501
G C GG +R LE
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLE 278
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 52.8 bits (121), Expect = 1e-07
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 405
++GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
K GGT + + +R+LE
Sbjct: 254 HDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQK 411
GRD++A AQ+G+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHD 242
Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLE 501
K GGT V + IR+LE
Sbjct: 243 EARKFSYQTGVKVVVAYGGTPVNQQIRELE 272
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 414
GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 50.4 bits (115), Expect = 7e-07
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 420
+ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 564 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIR 623
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLE 501
L +C GG+ V + I +L+
Sbjct: 624 KFSKPLGIRCVPVYGGSGVAQQISELK 650
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 50.0 bits (114), Expect = 9e-07
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLE 501
G C GG +++LE
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELE 555
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 423
+Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLE 501
G C GG ++++E
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIE 349
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 442 AKCHACIGGTNVREDIRQL 498
+ +G +++ +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 48.0 bits (109), Expect = 4e-06
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 420
+ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 431 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIR 490
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLE 501
L C GG+ V + I +L+
Sbjct: 491 KFSKALGIICVPVYGGSGVAQQISELK 517
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 47.2 bits (107), Expect = 6e-06
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 414
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLE 501
K GGT + + +R+LE
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 47.2 bits (107), Expect = 6e-06
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 414
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLE 501
K GGT + + +R+LE
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELE 277
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQL 498
G + GG IR L
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDL 285
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQL 498
G + GG IR L
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDL 285
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 405
A + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 406 QKVVIALGDHLNAKCHACIGG 468
+ LG L K +GG
Sbjct: 203 EDQAKMLGKGLPFKTALVVGG 223
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 405
A + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 6 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65
Query: 406 QKVVIALGDHLNAKCHACIGG 468
+ LG L K +GG
Sbjct: 66 EDQAKMLGKGLPFKTALVVGG 86
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 46.0 bits (104), Expect = 1e-05
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLE 501
G K GG +R L+
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQ 220
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 45.6 bits (103), Expect = 2e-05
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQ 408
+QG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q
Sbjct: 115 LQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
+ I L H + IGGT + + R+L+
Sbjct: 175 EANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
++G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V
Sbjct: 124 LEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEE 183
Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498
L H + IGG N R + +++
Sbjct: 184 LLKHHSQTVSMVIGGNNRRSEAQRI 208
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 4e-05
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQ 408
+QG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q
Sbjct: 417 LQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAA 476
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
+ L H + IGGT + + R+++
Sbjct: 477 EANTLLKYHPSIGVQVVIGGTKLPTEQRRMQ 507
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKVV 417
++G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ V
Sbjct: 81 LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEV 140
Query: 418 IAL 426
+L
Sbjct: 141 SSL 143
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 140 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVI 420
+ GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAK 322
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLE 501
+ A GG + E ++L+
Sbjct: 323 KFSKAYGLRVSAVYGGMSKHEQFKELK 349
Score = 31.1 bits (67), Expect = 0.44
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 408
+ G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIA 469
Query: 409 KVVIA-LGDHLNAKCHACIGGTNVREDIRQLE 501
A L +H IGGT R D ++LE
Sbjct: 470 AEGKALLKNHDGIGVQTLIGGTRFRLDQQRLE 501
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 426
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 427 GDHL-NAKCHACIGGTNVREDIRQLE 501
L N +GG V D+ LE
Sbjct: 114 VSTLPNVNSVLLVGGREVEADMNTLE 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-IQ 408
++G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q
Sbjct: 89 LKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAAT 148
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
+ L H + IGGT + + ++++
Sbjct: 149 EANTLLKYHPSIGVQVVIGGTRLGLEQKRMQ 179
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 408
+ G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIA 422
Query: 409 ---KVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
K ++ D + + IGGT + D ++LE
Sbjct: 423 AEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLE 454
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALG 429
GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ +G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 430 DHLNAKCHACIGG 468
IGG
Sbjct: 168 KFHKFSAGLLIGG 180
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 408
+ GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 409 KVVIALGDHLNAKCHACIGGTN 474
V+ G+ K GG++
Sbjct: 209 DVLREAGEPCGLKSICVYGGSS 230
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 41.1 bits (92), Expect = 4e-04
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Frame = +1
Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 363
N A QG+DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 364 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
ALI+ PTRELA Q+ + + +L+ K +GG + R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 40.7 bits (91), Expect = 5e-04
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Frame = +1
Query: 223 FCNP--ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 378
FC P A +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 379 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 501
PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.7 bits (91), Expect = 5e-04
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 402
A ++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 403 IQKVVIALGDHLNAKCHACIGGTNVR 480
+ +V ++ H + GG+ +R
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIR 230
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 5e-04
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRE 390
A I+G D + Q+ +G+GKT + + IL +I + E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 391 LAQQI-QKVVIALGDHLNAKCHACIGGTN 474
L QI ++V LG +GG N
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAL 426
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A+
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
Query: 427 GDHLNAKCHACIGGTNVRED 486
AKC N E+
Sbjct: 115 RLDF-AKCREVEADMNTLEE 133
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 37.9 bits (84), Expect = 0.004
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 405
+ G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 406 QKVVIALGDHLNAKCHACIGG 468
A G L GG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
+ G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V
Sbjct: 189 MMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Query: 424 LGDHLNAKCHACIGG 468
L + + IGG
Sbjct: 249 LLKYHSQTVGKVIGG 263
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 35.9 bits (79), Expect = 0.015
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ--- 402
+ GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191
Query: 403 -IQKVVIALGD--HLNAKCHACIGGTNVREDI 489
+++ V +L + + + CIGG ++R +
Sbjct: 192 VVEQFVASLVEDGYPRLRSLLCIGGVDMRSQL 223
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 417
+ GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 65 LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 34.7 bits (76), Expect = 0.035
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 402
+ GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 176 LSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 33.1 bits (72), Expect = 0.11
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 411
+ GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +
Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240
Query: 412 VV------IALGDHLNAKCHACIGGTNVREDI 489
VV + + + CIGG ++R +
Sbjct: 241 VVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQL 272
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 32.3 bits (70), Expect = 0.19
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 405
I G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 409 IDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 316 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 468
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 68 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 241
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 242 AIMP 253
+ P
Sbjct: 141 EVDP 144
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTR 387
+ + G+DVI A++G+GKT + I+ Q+ + + + +LIL P
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172
Query: 388 ELAQQIQKVVIALGD 432
L +Q+ ++V L D
Sbjct: 173 MLCEQVVRMVNGLVD 187
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 367 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 471
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 334 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 468
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 23 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 121
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 32 RRSEDWPEDSK---NGPSKDQGSYDGP 103
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 247 NAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 426
NA + GRDV+ +G GK S+ Q+ +R L+++P L Q + AL
Sbjct: 99 NAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAAL 152
Query: 427 G 429
G
Sbjct: 153 G 153
>At1g17270.1 68414.m02103 expressed protein
Length = 564
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 212 FEKPSAIQQRAIMPSSKDAMLS-LKPSQELEKLLLSLYRFYNKSIQA 349
F +AI ++ + K A+L + ++E+E++LLS +R N SI A
Sbjct: 133 FNSSNAISSSVVIDNVKAALLKQISVNKEIEEVLLSPHRTGNYSITA 179
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/90 (22%), Positives = 34/90 (37%)
Frame = +2
Query: 26 SERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 205
S+R+ +K PS +G G D+D +D+N L + A
Sbjct: 632 SKRQRSSLLAGAKGLPSSQKGGQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAVDA 691
Query: 206 YGFEKPSAIQQRAIMPSSKDAMLSLKPSQE 295
+KPS + R + S + ++ S E
Sbjct: 692 ALRKKPSFGKNRVLEQSDASLVANVDSSSE 721
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 501 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 397
L+LA++ D + A I I K+ HHLLN L
Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At5g03220.1 68418.m00270 transcriptional co-activator-related
contains weak similarity to Cofactor required for Sp1
transcriptional activation subunit 9 (Transcriptional
co-activator CRSP33) (RNA polymerase transcriptional
regulation mediator subunit 7 homolog) (hMED7)
(Activator-recruited cofactor 34 kDa component) (ARC34)
(Swiss-Prot:O43513) [Homo sapiens]
Length = 168
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 501 LQLANIFTDIGATNASMAFSIQVITKSYHHLLNLL 397
L+LA++ D + A I I K+ HHLLN L
Sbjct: 86 LELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120
>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 417
FIQ +D +++ ++ T + Q ++ +REC +L +E Q+I ++
Sbjct: 57 FIQIQDGLSETETRTRDVKLLITLLNQNCESPVRECLRKLLQSAKEEKQRISCLI 111
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 146 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 6
L P + GP EVH +N+L P M +N ++ LL F + K N
Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 5 G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 106
G N S+++ + WP + +G GSY P
Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 26.6 bits (56), Expect = 9.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 475 HWCHQCKHGI 446
HWCH C+ GI
Sbjct: 10 HWCHTCRRGI 19
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,307
Number of Sequences: 28952
Number of extensions: 258376
Number of successful extensions: 935
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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