Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00275
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 31 0.11
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.80
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.1
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 28 1.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 28 1.4
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 27 3.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 27 3.2
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 26 4.3
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.5
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 25 7.5
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.9
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 31.5 bits (68), Expect = 0.11
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = -1
Query: 476 PLVFMMTFLPGFLMRLS--TSDNGTCIGSGFSVSSITMLEATVAQSTSLASLPRDIPRSS 303
P F+ TFLPG + L+ + NGTC S+ +L TV ++ S +D+P
Sbjct: 205 PTEFLTTFLPGIVSGLTKGLAPNGTCQYFKNVCISLNILGDTVVKAIS-DDNTKDLPDEK 263
Query: 302 SLIAPINGYFTSPPQTCQRSRPYQRST 222
A N +F P +R++ ++R+T
Sbjct: 264 D--ASSNSHFFGP---TKRTKSWKRAT 285
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 253 HVCGGDVKYPLIGAMREELRGISRGKDAKDVDWATVASSIV---IEETEKP 396
H CG ++ Y + + RGI + K ++ W +A +V +E+ +KP
Sbjct: 2213 HRCGEELYYLIESIAAVQNRGIHQNKVRSNLSWFLMAKEVVWHLLEDNKKP 2263
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -1
Query: 476 PLVFMMTFLPGFLMRLSTSDNGTCIGSGFSVSSITMLEATVAQSTSLASLPRDIPRSSSL 297
P+ T P + +TS+N GS S+SS ++L + ++S + +P SSS+
Sbjct: 51 PVPGTTTIYPTSNVASNTSENYPYTGSK-SLSSSSILSNSTISTSSSTPITASVPTSSSI 109
Query: 296 IAPINGYFTSPPQT 255
++ TSP T
Sbjct: 110 LSNSTIPTTSPVPT 123
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 346 DWATVASSIVIEETEKPEPIQVPLSE-VLKRIKKPGKNVIIKTNGAALSDKNKR 504
D A+ +SS+V+E EK EP+ V + ++ +P K+ +++S R
Sbjct: 182 DLASTSSSVVVESGEKDEPVVVTEEKTMVSPPSRPDSTSTTKSKTSSISSARAR 235
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 508 PKYSVISHPGQPNVQAQAASHQKTLTPNSVPT 603
P+Y + P P + S+ T+ P+ VPT
Sbjct: 527 PRYEEATRPSSPTESVEIPSNTTTIAPSPVPT 558
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 26.6 bits (56), Expect = 3.2
Identities = 26/89 (29%), Positives = 39/89 (43%)
Frame = -3
Query: 282 WILYIAAADVPEKSSISTVHTIAPPKPLSLIHLILFLIDFSSSNPTHWSPWTQ*GTFISS 103
W I A P S ++ APP LSL L+L + + W+P+TQ FI
Sbjct: 21 WNHKIGAVVAPHYSPTLSIRNPAPPSQLSL-PLLLSSGAHLGHSTSIWNPYTQ--PFIYG 77
Query: 102 SQT*APPFLSISHTS**ARKPLSLVYSPA 16
+ +S+ T R+ +S+V S A
Sbjct: 78 KRE-GIHIISLDQTMVYLRRAISVVRSIA 105
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 449 VKTSS*RPMERHFQIKTNASPSTLLSHILVSQ 544
VKT S P+ RHF + +A L+S IL ++
Sbjct: 419 VKTISFDPLTRHFAHRLSAELGNLMSQILAAK 450
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -1
Query: 389 SVSSITMLEATV-AQSTSL---ASLPRDIPRSSSLIAPINGYFTSP 264
SV + + E+T+ A S+SL SL +DI + A NGYF P
Sbjct: 129 SVKQLKLTESTLLAPSSSLKPSVSLKKDISSNLLCAAASNGYFRRP 174
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 611 VYDVGTEFGVNVFWCEAAC 555
V ++GT +N WC A+C
Sbjct: 319 VLNIGTTLSINHNWCNASC 337
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 497 FLSESAAPLVFMMTFLPGFLMRLSTSDNGTCIGSGFSVSSIT--MLEATVAQSTSLASLP 324
F + + L+ + FLP F + CI SGF+++ +T+A SL+++
Sbjct: 1534 FQTANLPGLINISAFLPEFTSEAVSDYTKECIASGFTMARFLPFSTSSTLADKDSLSAVK 1593
Query: 323 R 321
+
Sbjct: 1594 K 1594
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 472 NGAALSDKNKREPKYSVISHPGQPNVQAQAA 564
+ A+L+DK+K K S + PG P+ A
Sbjct: 1866 SSASLADKSKATRKVSALMSPGLPHAAPSLA 1896
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 514 YSVISHPGQPNVQAQAASHQKTLTPNSV 597
+ VIS G+P +Q + KT TP +
Sbjct: 90 FKVISKDGKPVLQVEYKGETKTFTPEEI 117
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -1
Query: 533 GCEITEYLGSRLFLSESAAPLVFMMTFLPGFLMRLSTSD 417
G ++ + + + + L+F+M ++PG +R+S D
Sbjct: 385 GYQLADTVSCAAYSFAVSCALLFVMNYIPGLSLRVSRED 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,716
Number of Sequences: 5004
Number of extensions: 65287
Number of successful extensions: 249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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