Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00275
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 44 1e-04
01_01_0850 - 6641980-6642163,6642791-6644091 33 0.21
04_03_0649 - 18402976-18403220,18403305-18404499 33 0.27
07_01_0227 - 1663375-1665405 30 1.9
06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877 29 4.4
01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397... 29 4.4
10_01_0122 + 1495426-1495815 28 5.9
01_07_0040 + 40672633-40673369,40673412-40673558,40675019-406752... 28 5.9
05_07_0263 + 28775769-28777109 28 7.7
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 28 7.7
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 SGGGKAGEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVP-YCVHGDQWVGFDDEKSIRN 178
+ G + + G +AY E+ E L++ +V D V Y GD WV FD ++
Sbjct: 303 AAAGTKQRKSNQIGVIAYAEIEEYLKSQSVFVTHDNQSVADYFYSGDLWVSFDSAVVVQE 362
Query: 179 KMRWIKDNGFGGAMVWTVDMDDFSGT 256
K+ ++ + G + T+ DD + T
Sbjct: 363 KVEFVAKSQLLGYFLSTISFDDSNYT 388
>01_01_0850 - 6641980-6642163,6642791-6644091
Length = 494
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 298 REELRGISRGKDAKDVDWATVASSIVIEETEKPEPIQVPLSEVLKRIKK 444
+ LRGIS +D + + + +V+ E E + +P+ EV+K+++K
Sbjct: 209 KRALRGISDNEDEDEDEDGVDGAHVVVTEIESSDDDMIPIREVVKKMRK 257
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 98 WDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIKDNGFGGAMVWTVDMDD 244
+D+ Y GD WV FD + K+ + G G +W V+ DD
Sbjct: 342 YDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390
>07_01_0227 - 1663375-1665405
Length = 676
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = -1
Query: 494 LSESAAPLVFMMTFLPGFLMRLSTSDNGTCIGSGFSVSSITMLEATVAQSTSLASLPRDI 315
+ + P++ +T L ++ D+ I +GF+ S++T+ A +T L L D
Sbjct: 1 MKQYTLPIILFLTISISLLAISASGDHDQFIYTGFTGSNLTLDGAAKITATGLLGLTNDT 60
Query: 314 PRSSSLIAPINGYFTSPPQTCQRSRP 237
R I G+ + P C R P
Sbjct: 61 FR-------IKGHASHPAPLCFRKSP 79
>06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877
Length = 196
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 35 ESGFLAYYEVCEMLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMR 187
+SG L Y CE LR G Y+ + E +P H FDDE I+N R
Sbjct: 110 KSGVLCSYYTCEFLRVNGRYMTNAE-DLPRIEHR---TSFDDE-GIKNVQR 155
>01_07_0337 +
42838260-42838344,42838972-42839084,42839652-42839729,
42839831-42840054,42840084-42840128,42840156-42840264
Length = 217
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 308 SSSLIAPING---YFTSPPQTCQRSRPYQRSTP*PLRS 204
SSS P N YF PPQ +R YQ P PL S
Sbjct: 100 SSSWPTPSNNSDPYFEGPPQYMMNNRTYQDPAPDPLLS 137
>10_01_0122 + 1495426-1495815
Length = 129
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = -3
Query: 399 FWFLSFFYHYAGSYRG---------PVDIFGVFTSRYTSEFFPHSTDQWILYIAAADVPE 247
F+F FF+ +G R PV ++GV + ++ HS W+ + A
Sbjct: 15 FFFFFFFFFLSGCLRAGAGDRGALDPVLLYGV-DNAHSMVSSVHSLPAWLACVVLA---- 69
Query: 246 KSSISTVHTIAPPKPLSLIHLILFL 172
+ + + + PP PL H +LFL
Sbjct: 70 -AGHTPLQDVPPPSPLHADHALLFL 93
>01_07_0040 +
40672633-40673369,40673412-40673558,40675019-40675223,
40676730-40676816
Length = 391
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 213 PPKPLSLIHLILFLIDFSSSNPTHWSPWTQ*GTFISSSQT*APPFLSISH 64
P K L L+ L++F + + S P H P + T + PP I H
Sbjct: 6 PTKTLLLLLLLVFFLSLACSQPLHSEPMSTTTTATQPAPPPPPPQSKIPH 55
>05_07_0263 + 28775769-28777109
Length = 446
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 219 IAPPKPLSLIHLILFLIDFSSS 154
+APP PLSL+ ++L + S+S
Sbjct: 3 VAPPSPLSLVFVVLAAVSLSAS 24
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 372 YAGSYRGPVDI---FGVFTSRYTSEFFPHSTDQWI 277
Y G YR PVD+ +G RY ++ +P D+++
Sbjct: 184 YDGGYREPVDVRDRYGGGRDRYANDRYPSGGDRYV 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,103,580
Number of Sequences: 37544
Number of extensions: 472962
Number of successful extensions: 1381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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