Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00275
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 80 1e-15
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 79 2e-15
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 6e-15
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 78 7e-15
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 45 5e-05
SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13) 34 0.12
SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08) 32 0.37
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49) 31 0.85
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 31 1.1
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 31 1.1
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 30 2.0
SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13) 29 2.6
SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 29 4.5
SB_47023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_23702| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11) 28 7.9
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_36324| Best HMM Match : Fn_bind (HMM E-Value=6.6) 28 7.9
SB_29977| Best HMM Match : IL8 (HMM E-Value=1) 28 7.9
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Frame = +2
Query: 2 SGGGKAGEYTKESGFLAYYEVCEMLRNGGAYVWD-DEMKVPYCV----HGDQWVGFDDEK 166
+G G YT+ESGFL+YYE+C+M+ D E++ PY D WVG+DDE+
Sbjct: 10 NGNPPRGPYTRESGFLSYYEICDMMPKMKTMKTDQSEVRAPYGYVKQDWADVWVGYDDER 69
Query: 167 SIRNKM-RWIKDNGFGGAMVWTVDMDDFSGTS 259
S++ K+ IK G GAM W +D+DDF G+S
Sbjct: 70 SLQLKVEEVIKAKGLAGAMFWALDLDDFDGSS 101
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SGGGKAGEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNK 181
+G G+YT+E GFLAYYE+C+M + +K PY GD WVG+DDE S+ K
Sbjct: 394 NGNPTRGQYTREPGFLAYYEICKMNLQVTS-TESSAVKAPYGHVGDLWVGYDDEYSLSLK 452
Query: 182 M-RWIKDNGFGGAMVWTVDMDDFSG 253
+ R IK G GAM W + +DDF G
Sbjct: 453 VERVIKAKGMAGAMFWAIPLDDFKG 477
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 GKAGEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVPYCVH-GDQWVGFDDEKSIRNKMR 187
G G YTKE+G++AY+E+C+M G + D + PY V +QWVG+DD S++ K+
Sbjct: 282 GGQGPYTKEAGYIAYFEICKM---GLSVTRDPVLVSPYGVDVNNQWVGYDDVTSVQEKVN 338
Query: 188 WIKDNGFGGAMVWTVDMDDFSG 253
+IK GAM W +D+DDF G
Sbjct: 339 YIKKKSLLGAMFWAMDLDDFKG 360
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = +3
Query: 516 LCYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFATLK--DHKLAEADDKDA 665
+CY T+W+ R A ++TP+N+DP LCTHI+YAFA + + KLA + DA
Sbjct: 25 VCYYTNWAQYRGLA-KYTPDNIDPSLCTHIVYAFAKMNADNSKLAMFEWNDA 75
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 SGGGKAGEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNK 181
+ G AG+YT GFLAY+E+C+M G V +++ K PY G WVGFD+ KS+ K
Sbjct: 672 NNGLDAGKYTGAKGFLAYFEICKM---GLTVVENNKAKAPYGYKGHDWVGFDNPKSLIYK 728
Query: 182 M-RWIKDNGFGGAMVWTVDMDDFSG 253
+ +K N G M W +D+DDFSG
Sbjct: 729 IDNVVKKNQLRGVMFWAIDLDDFSG 753
Score = 74.1 bits (174), Expect = 9e-14
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 GGKAGEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKM- 184
G +G+YT GFLAYYE+C + G V ++ PY G W+GFDD S+ K+
Sbjct: 277 GVHSGKYTDAEGFLAYYEIC---KRGLTVVHKNKANAPYGYKGKDWIGFDDPNSLVYKID 333
Query: 185 RWIKDNGFGGAMVWTVDMDDFSG 253
+K N G M W +D+DDFSG
Sbjct: 334 NVVKKNQLRGVMFWAIDLDDFSG 356
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 519 CYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFATLKD--HKLAEADDKD 662
CY T+WS RP G F PE++DP LCTHI+++FA + HKL ++ D
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSFAKVNQTTHKLDIYEEND 74
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +3
Query: 516 LCYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFA--TLKDHKLAEADDKDAD 668
+CY T+WS RP G F PE++DP LCTH+I++F+ L H + + + D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHLCTHVIHSFSKVNLTTHVMEKYEKNDFD 461
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 53 YYEVCEMLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIKDNGFGGAMVWTV 232
YYE+C++ V D+ K PY HG QW+ +DD S+ K+ IK GAM W +
Sbjct: 672 YYELCKLPLTK---VTDNPAKAPYGYHGSQWIAYDDVTSLGRKVELIKKENLLGAMFWAI 728
Query: 233 DMDDF 247
D+DDF
Sbjct: 729 DLDDF 733
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 465 KDQWSGTFR*KQTRA-QVLCYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFATL 626
KD++ G + A +CY T+W+ RP +F P+++DP LCTHI+YAFA +
Sbjct: 383 KDEYGGELTLNKLAAYHRVCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAFAKI 437
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 45.2 bits (102), Expect = 5e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +3
Query: 516 LCYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFATL 626
+CY T+WS R +F PE++ LCTH++Y+FA +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKI 58
>SB_21436| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-13)
Length = 240
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 86 GAYVWDDEMKVPYCVHGDQWVGFDDEKSIRN 178
G+ W E V Y + GDQW + DE I+N
Sbjct: 173 GSNQWVTEYSVKYSLTGDQWQSYQDENGIKN 203
>SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)
Length = 398
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 324 SRYTSEFFPHSTDQWILYIAAADVPEKSSISTVHTIAPPKPLSLIH 187
+RYT ++ P +D W Y+ V + +SI T+ + P + S ++
Sbjct: 258 TRYTIQYLPEGSDVWNSYLENDVVKKHTSIHTLAPVGPRRDASTVY 303
>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Frame = +1
Query: 298 REELRGISRGKDAKDVDWATVA----SSIVIEETEKPEPIQVPLSEVLKRIKKP--GKNV 459
+++ +G ++++D D+ VA S++ KP+ ++V S + K P K
Sbjct: 202 KQKAKGTKSSQESED-DFLIVAPMKKSAVKPNARRKPKVVKVKSSSTSEEEKSPVAPKKK 260
Query: 460 IIKTNGAALSDKNKREPKYSVISHPGQPNVQAQAASHQKTLTPNS 594
+ KT ++NK+E + V++H AS ++ T S
Sbjct: 261 LTKTTKKREVEENKQEENHGVVTHAPMIGFPKMPASRKRPSTGES 305
>SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)
Length = 439
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = -1
Query: 452 LPGFLM----RLSTSDNGTCI--GSGFSVSSITMLEATVAQSTSLASLPRDIPRSSSLIA 291
LPGFL R TS G C+ S S + ++ E+ +S + + PR +PR S I
Sbjct: 176 LPGFLCFRRDRTHTSGGGVCVYVDSNISCTRLSDYESQDIESIWIDARPRRLPRKISRIL 235
Query: 290 PINGYFTSPPQTCQR 246
+ Y ++ C R
Sbjct: 236 LGSVYHSTSCDECSR 250
>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 422 KYSSASRSPVKTSS*RPMERHFQIKTNASPSTLLSHILVSQTSKRRPLHTRKR*PQTL 595
K S+S S + TSS +PM T+++P+ S ++ S PL R P L
Sbjct: 655 KVVSSSSSTISTSSGKPMTSEGPTVTSSNPTVTSSSMMASSVEANPPLPVRSPRPTPL 712
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 401 GSGFSVSSITMLEAT-VAQSTSLASLPRDIPRSSSLIAPINGYFTSPPQTCQRSRPYQRS 225
GSGF + S ++ + + + LP P+SS + P + P R Y R
Sbjct: 1190 GSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRRYPRR 1249
Query: 224 TP*PLR 207
TP P+R
Sbjct: 1250 TPKPVR 1255
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -1
Query: 401 GSGFSVSSITMLEAT-VAQSTSLASLPRDIPRSSSLIAPINGYFTSPPQTCQRSRPYQRS 225
GSGF + S ++ + + + LP P+SS + P + P R Y R
Sbjct: 124 GSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRRYPRR 183
Query: 224 TP*PLR 207
TP P+R
Sbjct: 184 TPKPVR 189
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 401 GSGFSVSSITMLEAT-VAQSTSLASLPRDIPRSSSLIAPINGYFTSPPQTCQRSRPYQRS 225
GSGF + S ++ + + + LP P+SS +AP + P + Y R
Sbjct: 1106 GSGFVLPSTPVVSSKPILPEPEVTPLPEVSPKSSETVAPTCTTESPPDVASTPVKRYPRR 1165
Query: 224 TP*PL-RSH 201
TP P+ R H
Sbjct: 1166 TPKPVSRKH 1174
>SB_14566| Best HMM Match : F5_F8_type_C (HMM E-Value=2.8e-13)
Length = 241
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 98 WDDEMKVPYCVHGDQWVGFDDEKSI 172
W E V Y + GDQW + DE +
Sbjct: 215 WVTEYSVEYSLRGDQWQSYQDENGL 239
>SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +3
Query: 498 QTRAQVLCYLTSWSAKRPSAGRFTPENVDPKLCTHIIYAFATLKDHKLAEADDK 659
Q RA VL Y A R RFT E+V ++CT +IYA A KL E + +
Sbjct: 601 QIRAFVLAYTNI--ALRRMLRRFTREDV-LRVCTDVIYAKAVPSGVKLVERNPR 651
>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 374 TMLEATVAQSTSLASLPRDIPRSSSLIAPINGYFT--SPPQTCQRSRPYQRSTP 219
T L +T ++TSLAS P D ++S +P++ T SP +T + P ++TP
Sbjct: 179 TSLASTPVETTSLASTPVDTTLTAS--SPVDTTLTASSPVETTPTASPPVKTTP 230
>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
Length = 731
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 301 EELRGISRGKDAKDVDWATVASSIVIEETEKPEPIQV 411
EE+R I +GK+ K+ D T + ++ P+PI++
Sbjct: 4 EEIRRICQGKEEKEKDQETQKQAKKEDQVSDPQPIKI 40
>SB_47023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 98 WDDEMKVPYCVHGDQWVGFDDEKSI 172
W + V Y + GDQW ++DE +
Sbjct: 8 WVTKYNVNYSLTGDQWQSYEDENGV 32
>SB_23702| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
Length = 187
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 98 WDDEMKVPYCVHGDQWVGFDDEKSI 172
W + V Y + GDQW ++DE +
Sbjct: 161 WVTKYNVNYSLTGDQWQSYEDENGV 185
>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 340 DVDWATVASSIVIEETEKPEPIQVPLSEVLKRIKK 444
D+D TVA+ IV E + P + + L++ +K +KK
Sbjct: 346 DLDPKTVANVIVRYEEQSPFRVDLDLTQTVKELKK 380
>SB_36324| Best HMM Match : Fn_bind (HMM E-Value=6.6)
Length = 200
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 404 YRFHCPKYSSASRSPVKTS--S*RPMERHFQIKTNASPSTLLSHILVSQTSKRRPLHT 571
Y C +R V+T+ S P ++Q +NA+ L H++ Q RP HT
Sbjct: 118 YANRCVLSDHLTRQQVRTTRPSQTPTGGYYQTISNANRCVLPDHLIGQQVRTTRPSHT 175
>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
Length = 521
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 471 QWSGTFR*KQTRAQVLCYLTSWSAKRPSAG-RFTPENV 581
QWS K ++L YL +W A G RFTPE +
Sbjct: 280 QWSHMVGYKDAWQRLLRYLRAWKAYNVGPGKRFTPEQL 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,915,341
Number of Sequences: 59808
Number of extensions: 491202
Number of successful extensions: 1447
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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