Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00275
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.6  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 470 VFMMTFLPGFLMRLSTSDNGTCI-GSGFSV 384
           VF++ ++P F + + TS   TCI G  F V
Sbjct: 280 VFLICWVPFFCVNIVTSYCKTCISGRAFQV 309



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 246 KSSISTVHTIAPPKP 202
           KS +  VH   PPKP
Sbjct: 239 KSFVRKVHATKPPKP 253


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 589 LGSTFSGVKRPALGRLA 539
           LG    G+ +PA+ RLA
Sbjct: 23  LGDNIQGITKPAIRRLA 39


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 171 IDFSSSNPTHWS 136
           I+ S SNPT WS
Sbjct: 562 IELSRSNPTPWS 573


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 470 VFMMTFLPGFLMRLSTSDNGTCIGSGFSVSSITML 366
           VF+   L G L+ L+ +DN   I S + + + T L
Sbjct: 6   VFLAVGLFGVLLLLTNADNSVHILSKYQLITSTTL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,096
Number of Sequences: 438
Number of extensions: 4760
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)