Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00275
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 58 5e-09
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 56 3e-08
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 49 3e-06
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 47 1e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 45 4e-05
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 44 9e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 35 0.056
At3g27860.1 68416.m03474 PWWP domain-containing protein 31 0.52
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 1.6
At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi... 29 2.1
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 29 3.7
At4g37440.1 68417.m05299 expressed protein 29 3.7
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At2g33260.1 68415.m04077 tryptophan/tyrosine permease family pro... 28 6.5
At3g58050.1 68416.m06471 expressed protein 27 8.5
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 8.5
At1g52780.1 68414.m05966 expressed protein 27 8.5
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 20 GEYTKESGFLAYYEVCEML-RNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIK 196
G G + Y ++ + + NG V++ + YC G W+G+DD +SI K+R+ K
Sbjct: 279 GAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAK 338
Query: 197 DNGFGGAMVWTVDMDDFSGTSAAA 268
G G W V DD SG S AA
Sbjct: 339 QRGLLGYFSWHVGADDNSGLSRAA 362
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 20 GEYTKESGFLAYYEVCE-MLRNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIK 196
G + G ++Y ++ ++ NG V DD M YC G W+G+D EKSI K+ + K
Sbjct: 257 GPAISDDGEISYRQLQTWIVDNGATKVHDDMMVGDYCYAGTTWIGYDSEKSIVTKVIYAK 316
Query: 197 DNGFGGAMVWTVDMDDFSGTSAAAM*SIH*SVL 295
G G W V DD S S+A H +L
Sbjct: 317 QKGLLGYFSWHVGGDDNSELSSAGSTPYHILIL 349
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 20 GEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVP-YCVHGDQWVGFDDEKSIRNKMRWIK 196
G G + Y ++ + + GA + D + YC G W+G+DD +SI +K+R+ K
Sbjct: 268 GAAISSDGSITYAKIRNYIIDNGAATFHDPAVIGFYCYVGTTWIGYDDNQSIVSKVRYAK 327
Query: 197 DNGFGGAMVWTVDMDDFSGTSAAAM*SI 280
G G W V D G S A S+
Sbjct: 328 LKGLLGYFSWHVGADYNCGLSRAGSFSL 355
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 20 GEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKVP-YCVHGDQWVGFDDEKSIRNKMRWIK 196
G G + Y ++ + + GA + D + YC G+ W+G+DD +SI K+++ K
Sbjct: 278 GAAISPDGSITYAKIRNYIVDNGAATFHDPAVIGFYCYVGNTWIGYDDNQSIVYKVKYAK 337
Query: 197 DNGFGGAMVWTVDMDDFSGTSAA 265
G G W V D G S A
Sbjct: 338 FTGLLGYFSWHVGADYNCGLSRA 360
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 20 GEYTKESGFLAYYEVCEMLRNGGAYVWDDEMKV-PYCVHGDQWVGFDDEKSIRNKMRWIK 196
G + G ++Y ++ + + A D + + YC G W+G+D E+SI K+ + K
Sbjct: 170 GPAISDDGEISYSQLKTWIVDNKATTVHDNIVIGDYCYAGTTWIGYDSEESIVTKVIYAK 229
Query: 197 DNGFGGAMVWTVDMDDFSGTSAAAM*SIH 283
G G W V DD S S+A H
Sbjct: 230 QKGLLGYFSWQVGGDDKSELSSAGSSPYH 258
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 17 AGEYTKESGFLAYYEVCEML-RNGGAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWI 193
+G G + Y ++ + N V++ + YC W+G+DD +SI K+++
Sbjct: 276 SGPAISPDGSIGYDQIRRFIVDNKATMVYNSNLVQNYCYAKKTWIGYDDNQSIVMKVKYA 335
Query: 194 KDNGFGGAMVWTVDMDDFSGTSAA 265
K G G W + DD S S A
Sbjct: 336 KQRGLLGYFSWHIGADDNSRLSRA 359
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 29 TKESGFLAYYEVCEMLRNGGAY-VWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIKDNG 205
T G + Y ++ ++ + A V+D + YC G +G+DD +S+ K+++ K G
Sbjct: 266 TSAEGSINYDQIKRLIVDHKARPVFDSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKG 325
Query: 206 FGGAMVWTVDMDDFSGTSAA 265
G W V DD G S A
Sbjct: 326 LLGYFSWHVGADDNFGLSRA 345
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 2 SGGGKAGEYTKESGFLAYYEVCEMLRNG-GAYVWDDEMKVPYCVHGDQWVGFDDEKSIRN 178
+G K+ + E G + Y ++ + +R+ A V+D ++ YC W+G++D +S+
Sbjct: 271 AGVAKSEDDVSEDGSINYAQINKFIRDEEAAKVYDPKVVGHYCFAKKIWIGYEDTQSVEA 330
Query: 179 KM 184
K+
Sbjct: 331 KV 332
>At3g27860.1 68416.m03474 PWWP domain-containing protein
Length = 652
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 298 REELRGISRGKDAKDVDWATVASSIVIEETEKPEPIQVPLSEVLKRIKKPGKNVIIKT-- 471
R+ RG+ D S +EE+EK + + PL+ + KR+ + + +
Sbjct: 315 RKSKRGLDENDDDGIEKREESNDSNHLEESEKKDDLATPLASICKRLNVDVSSCVKRCNG 374
Query: 472 NGAALSDKNKREPKYSVISHP 534
NG A+ KRE K S P
Sbjct: 375 NGEAILQTGKRERKKSKYLSP 395
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 524 ITEYLGSRLFLSESAAPLVFMMTFLPGF--LMRLSTSDNGTCIGSGFSVSSITMLEATVA 351
I E L +R+ LS A P V TF+ L S S +G+ + GFS SSI + +
Sbjct: 325 ILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSISHDGSLVAGGFSDSSIKVWDMAKI 384
Query: 350 QSTSLASLPRDIPRSSSLIAPING 279
+L + S I P NG
Sbjct: 385 GQAGSGALQAENDSSDQSIGP-NG 407
>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 686
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 349 WATVASSIVIEETEKPEPIQVPLSEVLKRIKKPGKNVIIKTNGAALSD-----KNKREPK 513
+++ +SSIV + P+PI PL +L + + P K V + + SD N R+
Sbjct: 50 FSSYSSSIVPRCSNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEV 109
Query: 514 YSVISHPGQPNV 549
S+I H G P +
Sbjct: 110 KSLIPHLGYPEI 121
>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1714
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 268 DVKYPLIGAMREELRGISRGKDAKDV-DWATVASSIVIEETEKPEPIQVPLSEVLKRIKK 444
+VK + R+ SR + AK D A S ++ET+KP+P SE+ + KK
Sbjct: 1091 EVKNNDVSVARKTSEKKSRKQRAKQAADLAKSTSRAPLQETKKPQPGSADDSEIKGKTKK 1150
Query: 445 PGKNVI 462
+I
Sbjct: 1151 SADTLI 1156
>At4g37440.1 68417.m05299 expressed protein
Length = 471
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Frame = +1
Query: 280 PLIGAMREELRGISRGKDAKDVDWATVASSIVIEETEKPEPIQVPLSEVLKRIKKPGKNV 459
PL+ E+ + I + K V A+V+S V E + E + LSE+L ++ GK++
Sbjct: 335 PLLAIKNEDEKSII--SEEKPVKSASVSSHHVSPEDD--ETTDILLSEILASKRREGKSI 390
Query: 460 I-----IKTNGAALSD-----KNKREPKYSVISHPGQPNVQAQAASHQK 576
I +KT A++ + KR P+ I + N + + S +K
Sbjct: 391 IPDKNLVKTEQASIEEGPSRPVRKRTPRNREIITKEESNPKRRRVSREK 439
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +1
Query: 358 VASSIVIEETEKPEPIQVPLSEVL---KRIKKPGKNVIIKTNGAALSDKNKREPKYSV-I 525
+ + V+ K P+QV + +L R ++ +KTNGAA S K++ K V
Sbjct: 263 IQNKCVVNRETKEVPVQVNQNSLLISSDRDREDNSGQKLKTNGAATSRSRKKKGKKPVEK 322
Query: 526 SHPGQPNVQAQAASHQKTLTPNSVPTS 606
S+ +P + + + T P S
Sbjct: 323 SYSLRPRIGRRTVNPAAGTTTPEAPVS 349
>At2g33260.1 68415.m04077 tryptophan/tyrosine permease family
protein contains Pfam profile PF03222:
Tryptophan/tyrosine permease family
Length = 436
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = -1
Query: 497 FLSESAAPLV--FMMTFLPGFLMRLSTSDNGTCIGSGFSVSSITMLEATVAQSTSLASLP 324
FL+ + PLV ++ F P + ++ G C FS++S+ + +VA+S LAS
Sbjct: 132 FLANAIFPLVSGILIGFFP--FNAIDFTNRGLCFLMLFSITSLVAIGLSVARSNVLASFG 189
Query: 323 RDIPRSSSLIAPI 285
+ + S ++ +
Sbjct: 190 QSCWKVSMVLPAV 202
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 454 NVIIKTNGAALSDKNKREPKYSVISHPGQPNVQ 552
N+ +TN S++++ E Y+ +S PG P+VQ
Sbjct: 596 NLYDETNNTINSEESEIETGYADLSPPGSPDVQ 628
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 137 DQWVGFDDEKSIRNKMRWIKDNGFGGAMVWTVDMDDFSGTSAAA 268
D W G+D + +R R +D G VD F S AA
Sbjct: 540 DSWEGYDPAQLVRESKRTRRDGSVDGFTPMGVDERSFGRGSVAA 583
>At1g52780.1 68414.m05966 expressed protein
Length = 1059
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 86 GAYVWDDEMKVPYCVHGDQWVGFDDEKSIRNKMRWIKDN 202
G YV +D+ + C+ G+ + DE N +W+K++
Sbjct: 183 GIYVENDDDERVLCMLGETMLPSRDESDSSNPWKWVKEH 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,547
Number of Sequences: 28952
Number of extensions: 361211
Number of successful extensions: 1114
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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