Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00274
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 135 3e-32
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 81 8e-16
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 81 8e-16
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 77 1e-14
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 77 2e-14
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 77 2e-14
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 75 7e-14
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 66 2e-11
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 66 2e-11
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 56 2e-08
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 56 2e-08
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 53 2e-07
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 52 5e-07
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 52 5e-07
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 44 1e-04
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 40 0.002
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 39 0.003
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 38 0.007
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 37 0.012
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 37 0.016
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 36 0.038
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 35 0.066
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 34 0.087
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 33 0.15
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 33 0.15
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 33 0.20
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 33 0.27
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 32 0.35
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 32 0.46
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 31 0.61
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 31 0.61
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 31 0.61
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 31 0.81
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 31 1.1
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 31 1.1
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 31 1.1
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 30 1.4
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 30 1.4
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 30 1.9
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 30 1.9
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 2.5
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 3.3
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 4.3
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 29 4.3
At5g32169.1 68418.m03692 hypothetical protein 28 5.7
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 28 5.7
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 28 7.6
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 7.6
At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4... 27 10.0
At4g01170.1 68417.m00155 hypothetical protein 27 10.0
At3g19520.1 68416.m02475 expressed protein contains Pfam profile... 27 10.0
At1g07750.1 68414.m00837 cupin family protein similar to legumin... 27 10.0
At1g03080.1 68414.m00282 kinase interacting family protein simil... 27 10.0
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 135 bits (327), Expect = 3e-32
Identities = 63/80 (78%), Positives = 72/80 (90%)
Frame = +3
Query: 258 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 437
+ K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E VDQN GI
Sbjct: 33 RLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGI 92
Query: 438 VGSTTGSNYYVRILSTIDRE 497
VGSTTGSNYYVRILSTI+RE
Sbjct: 93 VGSTTGSNYYVRILSTINRE 112
Score = 133 bits (322), Expect = 1e-31
Identities = 62/78 (79%), Positives = 70/78 (89%)
Frame = +2
Query: 497 IVEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVE 676
+++ SASVALH+HSNALVDVLPPEADSSIS+L EKPDV Y+DIGG D QKQEIREAVE
Sbjct: 113 LLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVE 172
Query: 677 LPLTHVELYRQIGIEPPR 730
LPLTH ELY+QIGI+PPR
Sbjct: 173 LPLTHHELYKQIGIDPPR 190
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/77 (45%), Positives = 53/77 (68%)
Frame = +2
Query: 500 VEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 679
+E S+ +H ++V +L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVEL
Sbjct: 147 LEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVEL 206
Query: 680 PLTHVELYRQIGIEPPR 730
PLTH ELY IGI+PP+
Sbjct: 207 PLTHPELYEDIGIKPPK 223
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Frame = +3
Query: 267 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGI 437
KL+R+ ++L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N I
Sbjct: 67 KLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 438 VGSTTGSNYYVRILSTIDRE 497
V S+ G YYV ILS +D++
Sbjct: 126 VSSSVGPEYYVGILSFVDKD 145
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/77 (45%), Positives = 53/77 (68%)
Frame = +2
Query: 500 VEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 679
+E S+ +H ++V +L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVEL
Sbjct: 147 LEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVEL 206
Query: 680 PLTHVELYRQIGIEPPR 730
PLTH ELY IGI+PP+
Sbjct: 207 PLTHPELYEDIGIKPPK 223
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Frame = +3
Query: 267 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VKRIQSVPLVIGQFLEAVDQNTGI 437
KL+R+ ++L ++EE++ +++R LK + A+E+ V ++ P+ +G E +D+N I
Sbjct: 67 KLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAI 125
Query: 438 VGSTTGSNYYVRILSTIDRE 497
V S+ G YYV ILS +D++
Sbjct: 126 VSSSVGPEYYVGILSFVDKD 145
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/71 (45%), Positives = 49/71 (69%)
Frame = +2
Query: 518 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVE 697
V ++K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E
Sbjct: 135 VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 194
Query: 698 LYRQIGIEPPR 730
+ ++GI PP+
Sbjct: 195 QFEKLGIRPPK 205
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/71 (43%), Positives = 49/71 (69%)
Frame = +2
Query: 518 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVE 697
V ++K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E
Sbjct: 136 VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 195
Query: 698 LYRQIGIEPPR 730
+ ++G+ PP+
Sbjct: 196 RFEKLGVRPPK 206
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/81 (41%), Positives = 51/81 (62%)
Frame = +2
Query: 500 VEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 679
+EA V + + + LPP+ D S++M+ +EKPD YSDIGG Q ++IRE VEL
Sbjct: 164 IEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVEL 223
Query: 680 PLTHVELYRQIGIEPPRVCSC 742
P+ H E + ++GI+PP+ C
Sbjct: 224 PMLHPEKFVRLGIDPPKGVLC 244
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/81 (38%), Positives = 52/81 (64%)
Frame = +2
Query: 500 VEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 679
+E V + ++ + LPP+ D S++M+ +EKPDV Y+D+GG Q +++RE VEL
Sbjct: 127 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVEL 186
Query: 680 PLTHVELYRQIGIEPPRVCSC 742
P+ H E + ++GI+PP+ C
Sbjct: 187 PMLHPEKFVKLGIDPPKGVLC 207
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +2
Query: 500 VEASASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 679
+ S VAL S L VLP + D +++++ ++ PD Y IGG+D Q +EI+E +EL
Sbjct: 120 ITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIEL 179
Query: 680 PLTHVELYRQIGIEPPR 730
P+ H EL+ +GI P+
Sbjct: 180 PIKHPELFESLGIAQPK 196
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +2
Query: 509 SASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLT 688
S VAL S L VLP + D +++++ ++ PD Y IGG+D Q +EI+E +ELP+
Sbjct: 123 STRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIK 182
Query: 689 HVELYRQIGIEPPR 730
H EL+ +GI P+
Sbjct: 183 HPELFESLGIAQPK 196
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/71 (33%), Positives = 45/71 (63%)
Frame = +2
Query: 518 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVE 697
V L + ++ LP E D + + ++ ++ YS +GG+ Q +E+RE++ELPL + E
Sbjct: 104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163
Query: 698 LYRQIGIEPPR 730
L+ ++GI+PP+
Sbjct: 164 LFLRVGIKPPK 174
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +3
Query: 252 ITKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNT 431
+++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 15 VSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNER 74
Query: 432 GIVGSTTGSNYYVRILSTIDRE 497
IV +++G Y V S +D+E
Sbjct: 75 LIVKASSGPRYVVGCRSKVDKE 96
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/71 (33%), Positives = 45/71 (63%)
Frame = +2
Query: 518 VALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVE 697
V L + ++ LP E D + + ++ ++ YS +GG+ Q +E+RE++ELPL + E
Sbjct: 104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163
Query: 698 LYRQIGIEPPR 730
L+ ++GI+PP+
Sbjct: 164 LFLRVGIKPPK 174
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +3
Query: 252 ITKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNT 431
+T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 15 VTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNER 74
Query: 432 GIVGSTTGSNYYVRILSTIDRE 497
IV +++G Y V S +D+E
Sbjct: 75 LIVKASSGPRYVVGCRSKVDKE 96
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
DV Y D+GG+ Q +IRE VELPL H +L++ IG++PP+
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 44.8 bits (101), Expect = 6e-05
Identities = 16/43 (37%), Positives = 30/43 (69%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E P+V ++DIGG++ K+E++E V+ P+ H E + + G+ P +
Sbjct: 473 EVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 242
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E P+V + DIGG++ K+E++E V+ P+ H E + + G+ P +
Sbjct: 473 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 515
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E P+V + DIGG++ K+E++E V+ P+ H E + + G+ P +
Sbjct: 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 516
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 727
E P V + D+GG + K ++ EAVE P H + +++IG PP
Sbjct: 717 EVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPP 758
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E P V + D+GG+ K+++++AVE P+ H + ++GI P R
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMR 321
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 584 SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
S L A + P+V++ D+GG++ K I + V+LPL H +L+
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLF 684
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 575 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+ I LQ +E D+ + DIGG+ +++E V PL + E + I PPR
Sbjct: 367 ADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPR 416
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
EKP++++SD+ G+++ KQ ++EAV LP+ + +
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPVKFPQFF 158
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
EKP+V+++ + G+++ KQ ++EAV LP+ + + I PR
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPR 128
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 614 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+ ++D+ G+D K+E+ E VE L + E Y ++G PPR
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPR 359
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 545 LVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
LV P E + ++ D DV++ IGG++T KQ + E V LPL EL+
Sbjct: 59 LVQTNPYEDVIACDVINPDHI-DVEFGSIGGLETIKQALYELVILPLKRPELF 110
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 614 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+ ++D+ G+D K+E+ E VE L + + Y ++G PPR
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPR 363
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 727
DV+++D+ G+ + E+ E V+ TH E+YR+ G++ P
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIP 443
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
EKP+V+++ + G+++ KQ ++EAV LP+ + +
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 33.1 bits (72), Expect = 0.20
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +2
Query: 608 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIE 721
PDV++ D+GG+D + + + P+ ++Y+ G++
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVD 560
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 620 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPP 727
+ D GG+ E+ V P+ + E +++IG++PP
Sbjct: 232 FKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPP 267
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
DV++ IGG+++ KQ + E V LPL EL+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELF 113
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 614 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
V ++DIG +D K+ ++E V LPL +L++ ++P R
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCR 449
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 273 QRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 392
+R LE+LE+QEE IK+E+ ++E +E + V L
Sbjct: 495 KRKLEYLEMQEELIKEEEEEEEEEMAKMKESASSQKDVAL 534
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 599 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQI 712
D P V++ D+ G+ K+ + EAV LPL E ++ I
Sbjct: 231 DSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGI 268
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E+ +V + DIG +D K+ ++E V LPL +L+ ++P R
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCR 556
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 602 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
E+ +V + DIG +D K+ ++E V LPL +L+ ++P R
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCR 551
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 614 VQYSDIGGMDTQKQEIREAVELPLTHVELY 703
V +SDIG ++ K ++E V LPL EL+
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELF 976
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 620 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
+ + G++ Q ++E V +PL + E + +G+ PPR
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPR 754
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 560 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
P + S + Q + V + D+ G+D KQ+ E VE L E + +G + P+
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPK 261
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 560 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
P + S + Q + V + D+ G+D KQ+ E VE L E + +G P+
Sbjct: 199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPK 254
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 611 DVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
DV + DIG ++ K ++E V LPL EL+
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELF 846
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 614 VQYSDIGGMDTQKQEIREAVELPLTHVELY 703
V + DIG ++ K+ ++E V LPL EL+
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELF 989
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 273 QRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV 386
+R LE+LE+QEE IK+E+ +KE +EE+ RI+ V
Sbjct: 516 RRKLEYLEMQEELIKEEE---EKE----EEELTRIKDV 546
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 530 KHSNALVDVLPPEADSS-ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
K S L ++ E + + +S + A + V++ DIG ++ K+ + E V LP+ EL+
Sbjct: 319 KPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELF 377
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 258 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 380
K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 729 KISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 267 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 446
KL + E L V+ + + L++E HAQ+ KR+ S L ++ V++ ++ S
Sbjct: 304 KLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKIKTVEEQCALLES 363
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 258 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 437
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 438 VG 443
VG
Sbjct: 707 VG 708
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 581 ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 703
+S + A + V++ DIG ++ K+ + E V LP+ EL+
Sbjct: 136 VSAVVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELF 176
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Frame = -3
Query: 359 LCMQIFFLQVSLFILNVLFLYF*E--L*HSLEFLVL--CY 252
LC ++F +++SL++ ++ FLY + HS+ L+L CY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLYLISFTVVHSVIILLLHCCY 243
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 578 SISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 730
S + Q + + + D+ G+D KQ+ E VE L E + +G + P+
Sbjct: 208 SKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPK 257
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 167 PRKMTKSQTQKAWRXXXXXXXXXXXXKIYNKVQETPKNVRVLRSTRR 307
P+KM Q QKAW+ K+ + ++ P ++ +S +R
Sbjct: 906 PKKMNSPQRQKAWKKDETPQSREKSKKLKSSLKVNPLKMKKTKSPQR 952
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 288 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 398
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to
SP|P42498 Phytochrome E {Arabidopsis thaliana}
Length = 1112
Score = 27.5 bits (58), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 552 STRALECL-CRATEAEASTILYQLLREYGHNNLSQWCCQLCL 430
S ALE L C+A + E + LR++G NN + +C+
Sbjct: 651 SRAALESLLCKALQGEEEKSVMLKLRKFGQNNHPDYSSDVCV 692
>At4g01170.1 68417.m00155 hypothetical protein
Length = 444
Score = 27.5 bits (58), Expect = 10.0
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +3
Query: 267 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 446
K R + LE Q+E I+ R L A+ E R VPLV Q D +V +
Sbjct: 125 KASRDVPLLETQQEDIQQRVRKLSDS--KAETETLRRDDVPLVGSQEDSQRDNTVPLVRT 182
Query: 447 TTGSNYYVRILSTID 491
R+++ ID
Sbjct: 183 AEEIQLAKRVVAEID 197
>At3g19520.1 68416.m02475 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 312
Score = 27.5 bits (58), Expect = 10.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 267 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL--VIGQFLE 413
KLQ + +E +EE ++ R LK + LH K + P+ IG+ +E
Sbjct: 217 KLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVE 267
>At1g07750.1 68414.m00837 cupin family protein similar to legumin
(11S-globulin) from Ginkgo biloba [GI:949869], 11S
globulin from Avena sativa [GI:472867]
Length = 356
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 106 SDSTRILLAIETMEEIGIILPEKDDQV 186
SDS+++ ++ GI+LPEK+++V
Sbjct: 55 SDSSKVAYVLQGSGTAGIVLPEKEEKV 81
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 258 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 377
K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 389 KVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,067
Number of Sequences: 28952
Number of extensions: 284808
Number of successful extensions: 920
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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