Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00273
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   141   6e-35
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.48 
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    27   2.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   4.5  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   7.9  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  141 bits (342), Expect = 6e-35
 Identities = 58/83 (69%), Positives = 72/83 (86%)
 Frame = +2

Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436
           + KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+
Sbjct: 130 MGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQL 189

Query: 437 AGVQDCYTSARGSTGTLGNFAKA 505
           AG++DCYT +RGST TLGNF KA
Sbjct: 190 AGIEDCYTQSRGSTKTLGNFVKA 212



 Score =  136 bits (328), Expect = 3e-33
 Identities = 62/83 (74%), Positives = 74/83 (89%)
 Frame = +3

Query: 6   GKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 185
           GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD
Sbjct: 47  GKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGD 105

Query: 186 NNGHIGLGXKCRXEVATAIRGAI 254
           ++GH+GLG KC  EVATAIRGAI
Sbjct: 106 SDGHVGLGIKCAKEVATAIRGAI 128



 Score = 28.7 bits (61), Expect = 0.64
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRDIP 567
           LG F  +  AA + TY  LTP+LW + P
Sbjct: 206 LGNFVKAAFAAASLTYGILTPNLWAERP 233


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 420 RSFFRWLVYRTATPQLVVQL 479
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 102 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGXKCRXEV-ATAIRGAISLLSCLFY 278
           E+ +++PVQK   AGQ   F   +   D     G   K   +V A  ++G + LL+ L  
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNG---KSMFDVRARVVQGHLILLARLVV 179

Query: 279 QFEEV 293
           + ++V
Sbjct: 180 RLDKV 184


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 KATHRPLQGHRQVWFCNSPADSCPSWYWN 399
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 518 LPRHMPTSLLTCGGT 562
           LPR +PTSLLT  G+
Sbjct: 27  LPRSIPTSLLTAAGS 41


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 58  NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 168
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 LQMAGVQDCYTSARGSTGTLGNFAK 502
           L+  G+ DC  SARG+   +  F+K
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSK 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,322
Number of Sequences: 5004
Number of extensions: 56040
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)