Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00273
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 157 8e-39
03_06_0386 + 33555682-33556344,33557138-33557299 155 2e-38
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 85 5e-17
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 40 0.001
05_03_0348 - 12792940-12793335 30 1.5
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 29 2.0
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 29 3.5
04_03_0265 - 13638816-13641348,13641432-13641490 28 4.6
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.1
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 8.0
06_03_0637 - 22995831-22996667,22997200-22997694 27 8.0
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 157 bits (380), Expect = 8e-39
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +2
Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 143 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQF 202
Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508
AG++D +TS+RGST TLGNF KAT
Sbjct: 203 AGIEDVFTSSRGSTKTLGNFVKAT 226
Score = 124 bits (298), Expect = 7e-29
Identities = 59/86 (68%), Positives = 69/86 (80%)
Frame = +3
Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182
E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +G
Sbjct: 59 ENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVG 117
Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260
D +GH+GLG KC EVATAIRGAI L
Sbjct: 118 DGDGHVGLGVKCAKEVATAIRGAIIL 143
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561
LG F + + KTY +LTPD WR+
Sbjct: 219 LGNFVKATFDCLMKTYGFLTPDFWRE 244
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (376), Expect = 2e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +2
Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436
LAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ
Sbjct: 140 LAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 199
Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508
AG++D +TS+RGST TLGNF KAT
Sbjct: 200 AGIEDVFTSSRGSTKTLGNFVKAT 223
Score = 128 bits (310), Expect = 2e-30
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = +3
Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182
EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +G
Sbjct: 56 EGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVG 114
Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260
DNNGH+GLG KC EVATAIRGAI L
Sbjct: 115 DNNGHVGLGVKCAKEVATAIRGAIIL 140
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561
LG F + + KTY +LTPD WRD
Sbjct: 216 LGNFVKATFDCLMKTYGFLTPDFWRD 241
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 84.6 bits (200), Expect = 5e-17
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = +2
Query: 314 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 493
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL N
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 494 FAKATM 511
F K M
Sbjct: 107 FVKHQM 112
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 168 FVAIGDNNGHIGLGXKCRXEVATAIRGAISLLSCLFYQFEEVTGVTRS-ESHTPS 329
FV +GD + HI LG KC AT + GAI L +F E T T S + HT S
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIIL--AMFRCAEGATRETISRKPHTVS 52
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGXKCRXEVATAIRGA 251
++ V+++ V K + G++ F+A V +GD GH+G+G EV AI A
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222
>05_03_0348 - 12792940-12793335
Length = 131
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Frame = +2
Query: 179 WRQQRSYWFGXXVQXGSRHCHSRRYFLAK-LSVLPVRRGYWGNKIGKPHTVPCKVTGKCG 355
WR++R W G + S R K ++V P R W ++ P + T +
Sbjct: 7 WRKRRRCWRGGGKKEASPSRRCRIQEKGKGVAVAPAWRPGWEERVP-----PSRATVRVR 61
Query: 356 SVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 475
+ + AP G G +AP KK A D RG+
Sbjct: 62 ELGIEASTAPVGKGGGAAPFEKKPSLAASAVDGSARGRGA 101
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 567 RDVPPQVRSEVGICLGNGSIVALAKFPKVPVEPRAEV*QSCTPAI*RSFLGTGADTIP 394
+DV Q R+E + +G G + A P V VE AEV ++ P S + ADT P
Sbjct: 418 KDVQLQPRNEP-VSIGKGVVPLPAIRPPVKVEAPAEVKEASQPVAGSSVVQCKADTSP 474
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.7 bits (61), Expect = 3.5
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Frame = +2
Query: 230 RHCHSRRYFLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPR----GTG 397
RH H R FL + RR + G G P+ + C GS + L+P+PR
Sbjct: 145 RHGHGR--FLRRRRRRRRRRRWRGVAGGDPNAIRCMPREGSGSQSPFLLPSPRYKSHSHR 202
Query: 398 IVSAPV-PKK-LLQMAGVQDCYTSARGSTGTLGNFAKA 505
I S P+ P+K L Q G + G L F +A
Sbjct: 203 IPSHPIAPRKTLTQRQGRRGADAMDASRVGELRTFVEA 240
>04_03_0265 - 13638816-13641348,13641432-13641490
Length = 863
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 228 VATAIRGAISLLSCLFYQFEEVTGVTRSESHTPSLARSPASVVL 359
V + GA+S+ +CL Y F V ++ + + + P++ +L
Sbjct: 816 VVKVLEGAVSVENCLDYSFANANSVISAQDNPSTYSAPPSASIL 859
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 36 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 155
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 313 KATHRPLQGHRQVWFCNSPADSCPSW 390
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>06_03_0637 - 22995831-22996667,22997200-22997694
Length = 443
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +2
Query: 251 YFLAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLL 430
+F + VL + GYWGN I P KV+ G V + G V +
Sbjct: 295 FFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGV------VREAKR 343
Query: 431 QMAGVQDCYTSARGSTG 481
+MAG +C A G TG
Sbjct: 344 RMAG--ECLRWAEGRTG 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,029
Number of Sequences: 37544
Number of extensions: 422398
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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