Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00273
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 8e-43
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.67
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04) 30 1.5
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 2.7
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 2.7
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 2.7
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 2.7
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.6
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 4.7
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 27 8.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 27 8.2
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 170 bits (413), Expect = 8e-43
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +2
Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436
LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGS VRLIPAPRGTGIVSAPVPKKLLQM
Sbjct: 105 LAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQM 164
Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508
AG++DCYTS RG T TLGNFAKAT
Sbjct: 165 AGIEDCYTSTRGQTATLGNFAKAT 188
Score = 148 bits (358), Expect = 4e-36
Identities = 72/84 (85%), Positives = 75/84 (89%)
Frame = +3
Query: 9 KIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 188
KI LE IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+
Sbjct: 22 KIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDS 81
Query: 189 NGHIGLGXKCRXEVATAIRGAISL 260
NGH+GLG KC EVATAIRGAI L
Sbjct: 82 NGHVGLGVKCSKEVATAIRGAIIL 105
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRDIPLT 573
LG F + AAI++TYAYLTPD+W++ T
Sbjct: 181 LGNFAKATFAAISETYAYLTPDMWKETVFT 210
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 254 NSASNGSGDFLSALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQGRAEEE 75
NS N D TNMT + + G CL + TC+ L DL NL+ + R ++E
Sbjct: 240 NSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRSRNQDE 297
Query: 74 I 72
+
Sbjct: 298 L 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 254 NSASNGSGDFLSALXTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQGRAEEE 75
NS N D TNMT + + G CL + TC+ L DL NL+ + R ++E
Sbjct: 524 NSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRSRNQDE 581
Query: 74 I 72
+
Sbjct: 582 L 582
>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
Length = 1223
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/86 (24%), Positives = 32/86 (37%)
Frame = +2
Query: 311 GKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 490
G T+ +G V V L P GTG+ ++ V L GV T+
Sbjct: 811 GNTLTLNAAASGCPQIVRVLLSSGPNGTGLAASSVSSVLTSSTGVPTLINRTPTGLRTVT 870
Query: 491 NFAKATMLPLPRHMPTSLLTCGGTSR 568
N A + + +PT L T ++
Sbjct: 871 NAAPTGLQTVTNAIPTGLRTASNNTQ 896
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 269 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 448
S++ R +G K +P + C V G GS++ RL A G +S+ + + + +
Sbjct: 472 SIISRRSSSFGRKGSRPSCL-CSVAGAQGSISSRLCSAISRQGSISSRLCSAISRQGSIS 530
Query: 449 DCYTSARGSTGTLGN 493
SA G++ +
Sbjct: 531 SRLCSAISRQGSISS 545
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 96 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 209
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 275 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 394
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 146 TAHTFQGICCHWRQQRSYW 202
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 347 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLG 490
+CG+ + + R ++ P+P L ++ +Q C + STGT G
Sbjct: 591 RCGTHALTKTVSERVPDVLKHPLPPPLQELQELQVCDPPSTSSTGTTG 638
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 269 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 409
+V RG+W + + H + C V +CG + L AP +VS+
Sbjct: 303 TVFTTYRGFWNYALVRKHWLKCVVNLQCG-IAKHLSQAPSNKLLVSS 348
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 192 GHIGLGXKCRXEVATAIRGAISLLSCLFYQFEEVTGVTRS 311
G GLG + G + ++SC +Y VTG+T S
Sbjct: 117 GQNGLGEDTEIPTRLHLHGKVRMVSCGYYHMAVVTGLTCS 156
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +3
Query: 96 ND-EVLKIMPVQKQTRA--GQRTRFKAFVAIGDNNGHIGLGXKCRXEVATAIRGAISLLS 266
ND +++K+ PVQ A G + +F V I H+ CR IR + L +
Sbjct: 320 NDHKLVKVKPVQTSLVAYGGSKIKFFGHVTIRVWRNHVSCQLDCRLLTTHEIRPILGLKA 379
Query: 267 CL 272
CL
Sbjct: 380 CL 381
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -2
Query: 453 QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTVCGFP 310
+SC PA + G G D G + TEPH QG P
Sbjct: 144 RSCGPAFGDPWFGCGRDLFIADNAGGNKASCTEPHKYARPQGATSDGP 191
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 27.9 bits (59), Expect = 6.2
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +2
Query: 278 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCY 457
P GY+ N + K V C+ KC + + I G P P+ + G+QDC
Sbjct: 212 PCSSGYYANTLRKTACVRCEAGFKCPTTSAAPIACSSGK---KCPFPEGV----GIQDC- 263
Query: 458 TSARGSTGTLGNFAKATMLP----LPRHMPTSLLTC 553
G T ++G A T P PR+ +++ C
Sbjct: 264 --GEG-TYSVGGQATCTDCPKGYACPRNDTDNMIKC 296
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 259 KEIAPRMAVATSXLHXXPKPI*PLLSPMATNA 164
K ++PR++ + + PK I P SP+ TNA
Sbjct: 971 KHLSPRLSSNANPIRRYPKTIAPSQSPIKTNA 1002
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 331 LQGHRQVWFCNS-PADSCPS 387
LQ HR WFC S P +CP+
Sbjct: 87 LQSHRHPWFCVSCPTVTCPT 106
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 144 GQRTRFKAFVAIGDNNGHIGLGXKCRXEVA 233
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,030
Number of Sequences: 59808
Number of extensions: 466623
Number of successful extensions: 1140
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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