Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00273
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 164 5e-41
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical... 28 5.4
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.5
U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase pro... 27 9.5
U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase pro... 27 9.5
U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase prot... 27 9.5
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 164 bits (398), Expect = 5e-41
Identities = 74/89 (83%), Positives = 80/89 (89%)
Frame = +2
Query: 260 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 439
AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MA
Sbjct: 154 AKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMA 213
Query: 440 GVQDCYTSARGSTGTLGNFAKATMLPLPR 526
G++DCYT+A+GST TLGNFAKAT L R
Sbjct: 214 GIEDCYTAAKGSTATLGNFAKATYAALQR 242
Score = 123 bits (297), Expect = 8e-29
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = +3
Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182
E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIG
Sbjct: 69 EKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIG 127
Query: 183 DNNGHIGLGXKCRXEVATAIRGAI 254
D+ GH+GLG KC EVATAIRGAI
Sbjct: 128 DHAGHVGLGVKCSKEVATAIRGAI 151
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561
LG F + AA+ +TY+YLTPDLW++
Sbjct: 229 LGNFAKATYAALQRTYSYLTPDLWKE 254
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 347 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 478
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 347 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 478
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>AF098992-14|AAD34669.1| 346|Caenorhabditis elegans Hypothetical
protein F53C3.13a protein.
Length = 346
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 308 SCYPSNLFELVKQTT*QGNSASNGSGDFLSALXTQTNMTVVVANGNKCLET 156
SC PSN F L++ G S +NG+G + + TQ + V N+ L+T
Sbjct: 272 SCGPSNEFGLIRMDRPDGVSNANGNGS-NTVVSTQHVIVSEVDPANQRLKT 321
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 173 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 87
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 173 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 87
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase
protein 2, isoform c protein.
Length = 570
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 184 TTTVILVWVXSAXRKSPLPFEALFP 258
T+ ++ + + RK+PLPF A+FP
Sbjct: 260 TSDLVRDSIEACGRKTPLPFSAIFP 284
>U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase
protein 2, isoform b protein.
Length = 426
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 184 TTTVILVWVXSAXRKSPLPFEALFP 258
T+ ++ + + RK+PLPF A+FP
Sbjct: 295 TSDLVRDSIEACGRKTPLPFSAIFP 319
>U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase protein
2, isoform a protein.
Length = 605
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 184 TTTVILVWVXSAXRKSPLPFEALFP 258
T+ ++ + + RK+PLPF A+FP
Sbjct: 295 TSDLVRDSIEACGRKTPLPFSAIFP 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,647
Number of Sequences: 27780
Number of extensions: 333796
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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