BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00273 (574 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 156 1e-38 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 1e-38 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 1e-38 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 1e-38 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 1e-38 At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 155 1e-38 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 45 4e-05 At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 29 2.2 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.9 At1g72390.1 68414.m08373 expressed protein 28 3.8 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 5.1 At1g73870.1 68414.m08554 zinc finger (B-box type) family protein 28 5.1 At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 5.1 At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 5.1 At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 8.9 At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 27 8.9 At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 27 8.9 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 156 bits (378), Expect = 1e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 151 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 210 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 211 AGIDDVFTSSRGSTKTLGNFVKAT 234 Score = 137 bits (331), Expect = 6e-33 Identities = 62/85 (72%), Positives = 72/85 (84%) Frame = +3 Query: 6 GKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 185 G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD Sbjct: 67 GHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGD 126 Query: 186 NNGHIGLGXKCRXEVATAIRGAISL 260 NGH+GLG KC EVATAIRGAI L Sbjct: 127 GNGHVGLGVKCSKEVATAIRGAIIL 151 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 227 LGNFVKATFDCLQKTYGFLTPEFWKE 252 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 156 bits (378), Expect = 1e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233 Score = 139 bits (337), Expect = 1e-33 Identities = 64/86 (74%), Positives = 73/86 (84%) Frame = +3 Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182 + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +G Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124 Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260 D NGH+GLG KC EVATAIRGAI L Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIIL 150 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKE 251 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 156 bits (378), Expect = 1e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233 Score = 139 bits (337), Expect = 1e-33 Identities = 64/86 (74%), Positives = 73/86 (84%) Frame = +3 Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182 + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +G Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124 Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260 D NGH+GLG KC EVATAIRGAI L Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIIL 150 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKE 251 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 156 bits (378), Expect = 1e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233 Score = 139 bits (337), Expect = 1e-33 Identities = 64/86 (74%), Positives = 73/86 (84%) Frame = +3 Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182 + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +G Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124 Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260 D NGH+GLG KC EVATAIRGAI L Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIIL 150 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKE 251 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 156 bits (378), Expect = 1e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 150 LAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 209 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 210 AGIDDVFTSSRGSTKTLGNFVKAT 233 Score = 139 bits (337), Expect = 1e-33 Identities = 64/86 (74%), Positives = 73/86 (84%) Frame = +3 Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182 + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +G Sbjct: 65 DNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVG 124 Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260 D NGH+GLG KC EVATAIRGAI L Sbjct: 125 DGNGHVGLGVKCSKEVATAIRGAIIL 150 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 226 LGNFVKATFDCLQKTYGFLTPEFWKE 251 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 155 bits (377), Expect = 1e-38 Identities = 68/84 (80%), Positives = 78/84 (92%) Frame = +2 Query: 257 LAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQM 436 LAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ Sbjct: 142 LAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQF 201 Query: 437 AGVQDCYTSARGSTGTLGNFAKAT 508 AG+ D +TS+RGST TLGNF KAT Sbjct: 202 AGIDDVFTSSRGSTKTLGNFVKAT 225 Score = 144 bits (348), Expect = 5e-35 Identities = 65/86 (75%), Positives = 75/86 (87%) Frame = +3 Query: 3 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIG 182 EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +G Sbjct: 57 EGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVG 116 Query: 183 DNNGHIGLGXKCRXEVATAIRGAISL 260 D+NGH+GLG KC EVATAIRGAI L Sbjct: 117 DSNGHVGLGVKCSKEVATAIRGAIIL 142 Score = 27.9 bits (59), Expect = 5.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 484 LGKFC*SHNAAIAKTYAYLTPDLWRD 561 LG F + + KTY +LTP+ W++ Sbjct: 218 LGNFVKATFDCLQKTYGFLTPEFWKE 243 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 44.8 bits (101), Expect = 4e-05 Identities = 27/81 (33%), Positives = 41/81 (50%) Frame = +2 Query: 269 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 448 S + RR + K T P + G G+ V L PA GTG+++ + +L+MAGV+ Sbjct: 199 SAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVE 258 Query: 449 DCYTSARGSTGTLGNFAKATM 511 + GS L N A+AT+ Sbjct: 259 NALGKQLGSNNALNN-ARATL 278 Score = 39.9 bits (89), Expect = 0.001 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +3 Query: 99 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGXKCRXEVATAIR 245 + V+++ V K + G++ +F+A V +GD G++G+G EV A++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQ 197 >At1g64880.1 68414.m07355 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni] Length = 515 Score = 29.1 bits (62), Expect = 2.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +2 Query: 320 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFA 499 HT+ + + L PAP TG+ + V K +L +AG ++ + GS + N Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGSRNSY-NTV 485 Query: 500 KATMLPL 520 KA + L Sbjct: 486 KAVLKAL 492 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 2.9 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = -1 Query: 316 LSDLVTPVTSSNW*NRQLSKEIAPRMAVATSXLHXXPKPI*PLLSPMATNALKRVRCPAR 137 L L+T + + +++ E A R VA + H P + P L P N R+R A Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221 Query: 136 VCFCTGMIFRTSSFR 92 CF +G + R + R Sbjct: 222 ACF-SGCVPRLEAAR 235 >At1g72390.1 68414.m08373 expressed protein Length = 1088 Score = 28.3 bits (60), Expect = 3.8 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -3 Query: 479 QLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQNHT 348 QL H+ + P+ QPS++ A Q Q Q HE + A Q T Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 5.1 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +2 Query: 320 HTVPCKVTGKCGSVTVRL 373 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 >At1g73870.1 68414.m08554 zinc finger (B-box type) family protein Length = 392 Score = 27.9 bits (59), Expect = 5.1 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 480 APWEILLKPQCCHCQDICLPH 542 +PW+ +KP+C + CLPH Sbjct: 295 SPWKTGIKPECMLGGNTCLPH 315 >At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 427 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +2 Query: 260 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 439 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 440 GVQ 448 GV+ Sbjct: 257 GVE 259 >At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 408 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +2 Query: 260 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 439 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 440 GVQ 448 GV+ Sbjct: 257 GVE 259 >At5g35970.1 68418.m04332 DNA-binding protein, putative similar to SWISS-PROT:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2, SMUBP-2) [Mesocricetus auratus] Length = 961 Score = 27.1 bits (57), Expect = 8.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -1 Query: 145 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 53 P R FC+G+ +S + PR+KS +S+ L Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73 >At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20) Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis thaliana]; similar to cytochrome P450 71A4, Solanum melongena, PIR2:S36805 Length = 390 Score = 27.1 bits (57), Expect = 8.9 Identities = 10/39 (25%), Positives = 21/39 (53%) Frame = +3 Query: 378 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEI 494 + ++++ LCL L + ++ RTAT + +PW + Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRL 39 >At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20) Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis thaliana]; similar to cytochrome P450 71A4, Solanum melongena, PIR2:S36805 Length = 497 Score = 27.1 bits (57), Expect = 8.9 Identities = 10/39 (25%), Positives = 21/39 (53%) Frame = +3 Query: 378 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEI 494 + ++++ LCL L + ++ RTAT + +PW + Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRL 39 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,183,823 Number of Sequences: 28952 Number of extensions: 316990 Number of successful extensions: 854 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 854 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1112061928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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