Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00272
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    67   2e-12
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.1  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
 Frame = +3

Query: 249 Q*PLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXX 413
           Q P +T+K+IG Q +  YE +DF       + FDSY++P  +++    R L+VD      
Sbjct: 107 QKPSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLP 166

Query: 414 XXXXXXXXXTATDVIHS*TIPSLGVKVDANPGD*IKQTSLLIDLE 548
                    T+ DVIHS  +PSLG+K D  P   + Q SL ID E
Sbjct: 167 IDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSR-LNQVSLSIDRE 210



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 497 C*SRRLNQTNFFINRPGIFFGPCSEICGANHSFIPIVMK 613
           C   RLNQ +  I+R G+F+G CSE+CG  HS +PIV++
Sbjct: 195 CIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQ 233



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 136 RFLLEGQIIELI*TIIPAFTLIFIA 210
           ++   G I+E I T+IPA  LI +A
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVA 93


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 421 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 308
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,156
Number of Sequences: 5004
Number of extensions: 31768
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)